Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03445

Experiment: LB_Anaerobic_60MIN_ZN4B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_03440 and CSW01_03445 are separated by 232 nucleotidesCSW01_03445 and CSW01_03450 overlap by 65 nucleotidesCSW01_03450 and CSW01_03455 are separated by 110 nucleotides CSW01_03440: CSW01_03440 - bifunctional diguanylate cyclase/phosphodiesterase, at 696,099 to 698,153 _03440 CSW01_03445: CSW01_03445 - SCP2 domain-containing protein, at 698,386 to 698,913 _03445 CSW01_03450: CSW01_03450 - N-acetyltransferase, at 698,849 to 699,400 _03450 CSW01_03455: CSW01_03455 - DNA polymerase III subunit psi, at 699,511 to 699,918 _03455 CSW01_03460: CSW01_03460 - ribosomal-protein-alanine N-acetyltransferase, at 699,879 to 700,364 _03460 Position (kb) 698 699Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 697.446 kb on + strand, within CSW01_03440at 697.454 kb on - strand, within CSW01_03440at 697.550 kb on - strand, within CSW01_03440at 697.669 kb on + strand, within CSW01_03440at 697.710 kb on + strand, within CSW01_03440at 697.710 kb on + strand, within CSW01_03440at 697.710 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.734 kb on + strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.797 kb on + strand, within CSW01_03440at 697.821 kb on + strand, within CSW01_03440at 697.904 kb on - strand, within CSW01_03440at 697.980 kb on - strandat 698.035 kb on - strandat 698.080 kb on + strandat 698.124 kb on - strandat 698.139 kb on + strandat 698.147 kb on - strandat 698.147 kb on - strandat 698.194 kb on - strandat 698.207 kb on - strandat 698.230 kb on - strandat 698.284 kb on - strandat 698.346 kb on + strandat 698.496 kb on + strand, within CSW01_03445at 698.496 kb on + strand, within CSW01_03445at 698.515 kb on + strand, within CSW01_03445at 698.515 kb on + strand, within CSW01_03445at 698.523 kb on - strand, within CSW01_03445at 698.591 kb on + strand, within CSW01_03445at 698.591 kb on + strand, within CSW01_03445at 698.599 kb on - strand, within CSW01_03445at 698.600 kb on - strand, within CSW01_03445at 698.718 kb on + strand, within CSW01_03445at 698.779 kb on + strand, within CSW01_03445at 699.046 kb on + strand, within CSW01_03450at 699.065 kb on + strand, within CSW01_03450at 699.070 kb on + strand, within CSW01_03450at 699.075 kb on + strand, within CSW01_03450at 699.078 kb on - strand, within CSW01_03450at 699.078 kb on - strand, within CSW01_03450at 699.083 kb on - strand, within CSW01_03450at 699.100 kb on - strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.145 kb on - strand, within CSW01_03450at 699.183 kb on + strand, within CSW01_03450at 699.183 kb on + strand, within CSW01_03450at 699.190 kb on - strand, within CSW01_03450at 699.191 kb on - strand, within CSW01_03450at 699.191 kb on - strand, within CSW01_03450at 699.191 kb on - strand, within CSW01_03450at 699.192 kb on + strand, within CSW01_03450at 699.192 kb on + strand, within CSW01_03450at 699.200 kb on - strand, within CSW01_03450at 699.205 kb on + strand, within CSW01_03450at 699.251 kb on + strand, within CSW01_03450at 699.286 kb on + strand, within CSW01_03450at 699.294 kb on - strand, within CSW01_03450at 699.315 kb on - strand, within CSW01_03450at 699.330 kb on + strand, within CSW01_03450at 699.376 kb on - strandat 699.489 kb on + strandat 699.501 kb on + strandat 699.501 kb on + strandat 699.514 kb on - strandat 699.595 kb on - strand, within CSW01_03455at 699.888 kb on + strandat 699.906 kb on - strandat 699.906 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
remove
697,446 + CSW01_03440 0.66 +0.3
697,454 - CSW01_03440 0.66 +0.6
697,550 - CSW01_03440 0.71 -0.1
697,669 + CSW01_03440 0.76 -0.6
697,710 + CSW01_03440 0.78 -3.3
697,710 + CSW01_03440 0.78 +0.2
697,710 + CSW01_03440 0.78 +1.0
697,732 + CSW01_03440 0.79 +1.3
697,732 + CSW01_03440 0.79 -0.6
697,732 + CSW01_03440 0.79 -0.2
697,732 + CSW01_03440 0.79 +0.2
697,732 + CSW01_03440 0.79 -0.9
697,732 + CSW01_03440 0.79 -0.2
697,732 + CSW01_03440 0.79 +0.4
697,732 + CSW01_03440 0.79 +1.0
697,734 + CSW01_03440 0.80 -0.1
697,740 - CSW01_03440 0.80 -0.2
697,740 - CSW01_03440 0.80 -0.3
697,740 - CSW01_03440 0.80 +0.1
697,740 - CSW01_03440 0.80 +0.4
697,740 - CSW01_03440 0.80 +0.6
697,740 - CSW01_03440 0.80 -0.4
697,740 - CSW01_03440 0.80 -0.1
697,797 + CSW01_03440 0.83 +0.2
697,821 + CSW01_03440 0.84 +0.7
697,904 - CSW01_03440 0.88 -2.2
697,980 - +0.1
698,035 - +0.1
698,080 + +0.0
698,124 - -1.5
698,139 + -1.2
698,147 - -1.8
698,147 - -0.2
698,194 - +1.4
698,207 - +0.5
698,230 - +0.5
698,284 - +0.4
698,346 + +0.1
698,496 + CSW01_03445 0.21 +1.7
698,496 + CSW01_03445 0.21 +0.7
698,515 + CSW01_03445 0.24 +1.2
698,515 + CSW01_03445 0.24 -0.5
698,523 - CSW01_03445 0.26 +1.4
698,591 + CSW01_03445 0.39 -0.9
698,591 + CSW01_03445 0.39 +0.2
698,599 - CSW01_03445 0.40 -0.3
698,600 - CSW01_03445 0.41 -0.7
698,718 + CSW01_03445 0.63 +0.2
698,779 + CSW01_03445 0.74 +0.5
699,046 + CSW01_03450 0.36 +0.2
699,065 + CSW01_03450 0.39 +0.1
699,070 + CSW01_03450 0.40 +0.7
699,075 + CSW01_03450 0.41 -0.4
699,078 - CSW01_03450 0.41 -1.2
699,078 - CSW01_03450 0.41 +1.1
699,083 - CSW01_03450 0.42 -0.3
699,100 - CSW01_03450 0.45 -0.7
699,114 + CSW01_03450 0.48 +0.5
699,114 + CSW01_03450 0.48 +0.3
699,114 + CSW01_03450 0.48 -0.1
699,114 + CSW01_03450 0.48 +0.2
699,114 + CSW01_03450 0.48 -0.3
699,114 + CSW01_03450 0.48 -0.2
699,114 + CSW01_03450 0.48 +0.6
699,114 + CSW01_03450 0.48 +0.2
699,114 + CSW01_03450 0.48 +0.2
699,122 - CSW01_03450 0.49 +0.7
699,122 - CSW01_03450 0.49 +0.8
699,122 - CSW01_03450 0.49 +0.2
699,122 - CSW01_03450 0.49 -0.6
699,122 - CSW01_03450 0.49 +1.8
699,145 - CSW01_03450 0.54 +0.6
699,183 + CSW01_03450 0.61 +0.9
699,183 + CSW01_03450 0.61 +0.4
699,190 - CSW01_03450 0.62 +0.1
699,191 - CSW01_03450 0.62 +0.2
699,191 - CSW01_03450 0.62 +2.7
699,191 - CSW01_03450 0.62 +0.3
699,192 + CSW01_03450 0.62 -0.6
699,192 + CSW01_03450 0.62 -0.3
699,200 - CSW01_03450 0.64 -0.2
699,205 + CSW01_03450 0.64 -1.1
699,251 + CSW01_03450 0.73 +1.3
699,286 + CSW01_03450 0.79 -0.0
699,294 - CSW01_03450 0.81 +0.2
699,315 - CSW01_03450 0.84 +1.5
699,330 + CSW01_03450 0.87 -0.7
699,376 - -2.2
699,489 + +0.3
699,501 + -0.3
699,501 + -0.3
699,514 - +0.6
699,595 - CSW01_03455 0.21 +0.4
699,888 + +0.7
699,906 - +0.8
699,906 - -0.7

Or see this region's nucleotide sequence