Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03385

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03365 and CSW01_03370 are separated by 7 nucleotidesCSW01_03370 and CSW01_03375 are separated by 53 nucleotidesCSW01_03375 and CSW01_03380 are separated by 209 nucleotidesCSW01_03380 and CSW01_03385 are separated by 18 nucleotidesCSW01_03385 and CSW01_03390 are separated by 24 nucleotides CSW01_03365: CSW01_03365 - preprotein translocase subunit SecG, at 681,329 to 681,664 _03365 CSW01_03370: CSW01_03370 - tRNA-Leu, at 681,672 to 681,755 _03370 CSW01_03375: CSW01_03375 - tRNA-Met, at 681,809 to 681,885 _03375 CSW01_03380: CSW01_03380 - ribosome maturation factor RimP, at 682,095 to 682,550 _03380 CSW01_03385: CSW01_03385 - transcription termination/antitermination protein NusA, at 682,569 to 684,056 _03385 CSW01_03390: CSW01_03390 - translation initiation factor IF-2, at 684,081 to 686,777 _03390 Position (kb) 682 683 684 685Strain fitness (log2 ratio) -1 0 1at 683.974 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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683,974 + +0.2

Or see this region's nucleotide sequence