Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03255

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03250 and CSW01_03255 are separated by 2 nucleotidesCSW01_03255 and CSW01_03260 are separated by 2 nucleotides CSW01_03250: CSW01_03250 - ABC transporter ATP-binding protein, at 651,227 to 652,210 _03250 CSW01_03255: CSW01_03255 - ABC transporter permease, at 652,213 to 653,238 _03255 CSW01_03260: CSW01_03260 - ABC transporter permease, at 653,241 to 654,227 _03260 Position (kb) 652 653 654Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 651.217 kb on + strandat 651.263 kb on - strandat 651.309 kb on - strandat 651.342 kb on - strand, within CSW01_03250at 651.363 kb on + strand, within CSW01_03250at 651.449 kb on + strand, within CSW01_03250at 651.462 kb on + strand, within CSW01_03250at 651.470 kb on - strand, within CSW01_03250at 651.472 kb on + strand, within CSW01_03250at 651.572 kb on + strand, within CSW01_03250at 651.579 kb on + strand, within CSW01_03250at 651.580 kb on - strand, within CSW01_03250at 651.592 kb on - strand, within CSW01_03250at 651.598 kb on + strand, within CSW01_03250at 651.636 kb on + strand, within CSW01_03250at 651.655 kb on + strand, within CSW01_03250at 651.666 kb on + strand, within CSW01_03250at 651.666 kb on + strand, within CSW01_03250at 651.666 kb on + strand, within CSW01_03250at 651.674 kb on - strand, within CSW01_03250at 651.674 kb on - strand, within CSW01_03250at 651.674 kb on - strand, within CSW01_03250at 651.674 kb on - strand, within CSW01_03250at 651.674 kb on - strand, within CSW01_03250at 651.674 kb on - strand, within CSW01_03250at 651.674 kb on - strand, within CSW01_03250at 651.722 kb on + strand, within CSW01_03250at 651.744 kb on + strand, within CSW01_03250at 651.827 kb on - strand, within CSW01_03250at 651.829 kb on + strand, within CSW01_03250at 651.848 kb on - strand, within CSW01_03250at 651.879 kb on + strand, within CSW01_03250at 651.889 kb on + strand, within CSW01_03250at 651.892 kb on - strand, within CSW01_03250at 651.966 kb on + strand, within CSW01_03250at 651.991 kb on - strand, within CSW01_03250at 651.991 kb on - strand, within CSW01_03250at 652.029 kb on + strand, within CSW01_03250at 652.094 kb on + strand, within CSW01_03250at 652.094 kb on + strand, within CSW01_03250at 652.094 kb on + strand, within CSW01_03250at 652.102 kb on - strand, within CSW01_03250at 652.103 kb on - strand, within CSW01_03250at 652.110 kb on - strand, within CSW01_03250at 652.195 kb on - strandat 652.201 kb on - strandat 652.300 kb on + strandat 652.308 kb on - strandat 652.308 kb on - strandat 652.354 kb on + strand, within CSW01_03255at 652.355 kb on - strand, within CSW01_03255at 652.362 kb on + strand, within CSW01_03255at 652.362 kb on - strand, within CSW01_03255at 652.362 kb on - strand, within CSW01_03255at 652.362 kb on - strand, within CSW01_03255at 652.362 kb on - strand, within CSW01_03255at 652.376 kb on - strand, within CSW01_03255at 652.429 kb on - strand, within CSW01_03255at 652.439 kb on - strand, within CSW01_03255at 652.447 kb on - strand, within CSW01_03255at 652.456 kb on + strand, within CSW01_03255at 652.470 kb on - strand, within CSW01_03255at 652.482 kb on + strand, within CSW01_03255at 652.500 kb on - strand, within CSW01_03255at 652.634 kb on - strand, within CSW01_03255at 652.662 kb on + strand, within CSW01_03255at 652.662 kb on + strand, within CSW01_03255at 652.662 kb on + strand, within CSW01_03255at 652.670 kb on - strand, within CSW01_03255at 652.670 kb on - strand, within CSW01_03255at 652.670 kb on - strand, within CSW01_03255at 652.694 kb on + strand, within CSW01_03255at 652.694 kb on + strand, within CSW01_03255at 652.702 kb on - strand, within CSW01_03255at 652.702 kb on - strand, within CSW01_03255at 652.702 kb on - strand, within CSW01_03255at 652.702 kb on - strand, within CSW01_03255at 652.702 kb on - strand, within CSW01_03255at 652.702 kb on - strand, within CSW01_03255at 652.714 kb on + strand, within CSW01_03255at 652.732 kb on + strand, within CSW01_03255at 652.732 kb on + strand, within CSW01_03255at 652.740 kb on - strand, within CSW01_03255at 652.740 kb on - strand, within CSW01_03255at 652.748 kb on - strand, within CSW01_03255at 652.752 kb on + strand, within CSW01_03255at 652.776 kb on + strand, within CSW01_03255at 652.776 kb on + strand, within CSW01_03255at 652.784 kb on - strand, within CSW01_03255at 652.921 kb on + strand, within CSW01_03255at 652.934 kb on + strand, within CSW01_03255at 652.976 kb on - strand, within CSW01_03255at 653.007 kb on + strand, within CSW01_03255at 653.035 kb on + strand, within CSW01_03255at 653.043 kb on - strand, within CSW01_03255at 653.116 kb on - strand, within CSW01_03255at 653.126 kb on - strand, within CSW01_03255at 653.134 kb on + strand, within CSW01_03255at 653.142 kb on + strandat 653.150 kb on - strandat 653.180 kb on - strandat 653.256 kb on + strandat 653.276 kb on - strandat 653.276 kb on - strandat 653.278 kb on + strandat 653.286 kb on - strandat 653.286 kb on - strandat 653.300 kb on + strandat 653.308 kb on - strandat 653.308 kb on - strandat 653.308 kb on - strandat 653.308 kb on - strandat 653.308 kb on - strandat 653.308 kb on - strandat 653.331 kb on - strandat 653.379 kb on + strand, within CSW01_03260at 653.379 kb on + strand, within CSW01_03260at 653.379 kb on + strand, within CSW01_03260at 653.379 kb on + strand, within CSW01_03260at 653.379 kb on + strand, within CSW01_03260at 653.379 kb on + strand, within CSW01_03260at 653.384 kb on + strand, within CSW01_03260at 653.384 kb on + strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.387 kb on - strand, within CSW01_03260at 653.389 kb on - strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.391 kb on + strand, within CSW01_03260at 653.392 kb on - strand, within CSW01_03260at 653.392 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.399 kb on - strand, within CSW01_03260at 653.404 kb on - strand, within CSW01_03260at 653.415 kb on + strand, within CSW01_03260at 653.488 kb on - strand, within CSW01_03260at 653.490 kb on + strand, within CSW01_03260at 653.505 kb on + strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.513 kb on - strand, within CSW01_03260at 653.531 kb on + strand, within CSW01_03260at 653.531 kb on + strand, within CSW01_03260at 653.533 kb on + strand, within CSW01_03260at 653.539 kb on + strand, within CSW01_03260at 653.581 kb on - strand, within CSW01_03260at 653.608 kb on + strand, within CSW01_03260at 653.629 kb on + strand, within CSW01_03260at 653.637 kb on - strand, within CSW01_03260at 653.676 kb on + strand, within CSW01_03260at 653.710 kb on + strand, within CSW01_03260at 653.710 kb on + strand, within CSW01_03260at 653.712 kb on - strand, within CSW01_03260at 653.725 kb on + strand, within CSW01_03260at 653.743 kb on - strand, within CSW01_03260at 653.865 kb on + strand, within CSW01_03260at 653.870 kb on + strand, within CSW01_03260at 653.870 kb on + strand, within CSW01_03260at 653.870 kb on + strand, within CSW01_03260at 653.870 kb on + strand, within CSW01_03260at 653.878 kb on - strand, within CSW01_03260at 653.878 kb on - strand, within CSW01_03260at 653.911 kb on + strand, within CSW01_03260at 653.928 kb on + strand, within CSW01_03260at 653.938 kb on + strand, within CSW01_03260at 653.938 kb on + strand, within CSW01_03260at 653.990 kb on + strand, within CSW01_03260at 653.998 kb on - strand, within CSW01_03260at 653.998 kb on - strand, within CSW01_03260at 654.007 kb on + strand, within CSW01_03260at 654.015 kb on - strand, within CSW01_03260at 654.017 kb on + strand, within CSW01_03260at 654.019 kb on + strand, within CSW01_03260at 654.024 kb on + strand, within CSW01_03260at 654.065 kb on + strand, within CSW01_03260at 654.083 kb on + strand, within CSW01_03260at 654.117 kb on + strand, within CSW01_03260at 654.170 kb on - strandat 654.229 kb on + strandat 654.229 kb on + strandat 654.229 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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651,217 + -0.1
651,263 - +1.2
651,309 - +1.2
651,342 - CSW01_03250 0.12 +1.3
651,363 + CSW01_03250 0.14 +1.2
651,449 + CSW01_03250 0.23 +0.7
651,462 + CSW01_03250 0.24 +0.5
651,470 - CSW01_03250 0.25 +0.9
651,472 + CSW01_03250 0.25 -0.2
651,572 + CSW01_03250 0.35 -0.0
651,579 + CSW01_03250 0.36 +0.0
651,580 - CSW01_03250 0.36 +0.0
651,592 - CSW01_03250 0.37 +0.4
651,598 + CSW01_03250 0.38 +1.8
651,636 + CSW01_03250 0.42 +0.7
651,655 + CSW01_03250 0.43 +0.9
651,666 + CSW01_03250 0.45 +0.3
651,666 + CSW01_03250 0.45 -0.0
651,666 + CSW01_03250 0.45 -1.1
651,674 - CSW01_03250 0.45 -0.4
651,674 - CSW01_03250 0.45 +1.0
651,674 - CSW01_03250 0.45 -0.4
651,674 - CSW01_03250 0.45 -0.5
651,674 - CSW01_03250 0.45 -1.0
651,674 - CSW01_03250 0.45 +0.3
651,674 - CSW01_03250 0.45 +0.0
651,722 + CSW01_03250 0.50 +0.3
651,744 + CSW01_03250 0.53 +0.6
651,827 - CSW01_03250 0.61 -0.5
651,829 + CSW01_03250 0.61 -0.6
651,848 - CSW01_03250 0.63 -0.2
651,879 + CSW01_03250 0.66 +0.6
651,889 + CSW01_03250 0.67 +0.1
651,892 - CSW01_03250 0.68 +0.1
651,966 + CSW01_03250 0.75 +0.7
651,991 - CSW01_03250 0.78 +1.0
651,991 - CSW01_03250 0.78 -0.4
652,029 + CSW01_03250 0.82 +0.9
652,094 + CSW01_03250 0.88 +0.5
652,094 + CSW01_03250 0.88 -0.3
652,094 + CSW01_03250 0.88 -0.6
652,102 - CSW01_03250 0.89 -1.4
652,103 - CSW01_03250 0.89 -0.1
652,110 - CSW01_03250 0.90 +0.1
652,195 - -0.8
652,201 - -0.8
652,300 + +0.2
652,308 - -1.8
652,308 - -1.9
652,354 + CSW01_03255 0.14 -2.9
652,355 - CSW01_03255 0.14 -0.0
652,362 + CSW01_03255 0.15 -0.0
652,362 - CSW01_03255 0.15 +1.7
652,362 - CSW01_03255 0.15 -1.7
652,362 - CSW01_03255 0.15 +0.5
652,362 - CSW01_03255 0.15 -0.0
652,376 - CSW01_03255 0.16 -0.3
652,429 - CSW01_03255 0.21 +0.0
652,439 - CSW01_03255 0.22 -0.8
652,447 - CSW01_03255 0.23 +1.0
652,456 + CSW01_03255 0.24 +0.3
652,470 - CSW01_03255 0.25 -0.0
652,482 + CSW01_03255 0.26 +1.6
652,500 - CSW01_03255 0.28 +1.3
652,634 - CSW01_03255 0.41 +0.1
652,662 + CSW01_03255 0.44 +0.4
652,662 + CSW01_03255 0.44 +0.9
652,662 + CSW01_03255 0.44 +0.0
652,670 - CSW01_03255 0.45 +0.5
652,670 - CSW01_03255 0.45 +0.3
652,670 - CSW01_03255 0.45 -1.0
652,694 + CSW01_03255 0.47 +0.9
652,694 + CSW01_03255 0.47 -0.1
652,702 - CSW01_03255 0.48 +0.7
652,702 - CSW01_03255 0.48 +0.1
652,702 - CSW01_03255 0.48 +1.6
652,702 - CSW01_03255 0.48 +0.6
652,702 - CSW01_03255 0.48 -0.6
652,702 - CSW01_03255 0.48 +0.6
652,714 + CSW01_03255 0.49 -0.1
652,732 + CSW01_03255 0.51 -0.3
652,732 + CSW01_03255 0.51 +0.3
652,740 - CSW01_03255 0.51 +0.8
652,740 - CSW01_03255 0.51 -1.2
652,748 - CSW01_03255 0.52 -0.1
652,752 + CSW01_03255 0.53 +0.2
652,776 + CSW01_03255 0.55 -0.2
652,776 + CSW01_03255 0.55 +1.7
652,784 - CSW01_03255 0.56 +1.6
652,921 + CSW01_03255 0.69 +0.2
652,934 + CSW01_03255 0.70 -0.1
652,976 - CSW01_03255 0.74 +0.5
653,007 + CSW01_03255 0.77 +0.2
653,035 + CSW01_03255 0.80 -0.3
653,043 - CSW01_03255 0.81 -1.8
653,116 - CSW01_03255 0.88 -0.1
653,126 - CSW01_03255 0.89 +1.4
653,134 + CSW01_03255 0.90 +1.1
653,142 + -0.9
653,150 - +0.4
653,180 - -1.0
653,256 + +0.3
653,276 - -0.7
653,276 - +0.4
653,278 + +0.8
653,286 - -1.9
653,286 - +0.5
653,300 + -1.0
653,308 - -0.2
653,308 - -0.1
653,308 - -3.4
653,308 - +0.2
653,308 - +2.4
653,308 - -0.1
653,331 - -0.6
653,379 + CSW01_03260 0.14 +0.3
653,379 + CSW01_03260 0.14 -0.4
653,379 + CSW01_03260 0.14 +1.4
653,379 + CSW01_03260 0.14 +0.1
653,379 + CSW01_03260 0.14 -3.7
653,379 + CSW01_03260 0.14 +0.1
653,384 + CSW01_03260 0.14 +0.7
653,384 + CSW01_03260 0.14 -0.9
653,387 - CSW01_03260 0.15 +0.5
653,387 - CSW01_03260 0.15 -0.4
653,387 - CSW01_03260 0.15 +0.4
653,387 - CSW01_03260 0.15 +2.3
653,387 - CSW01_03260 0.15 -1.0
653,387 - CSW01_03260 0.15 -0.0
653,387 - CSW01_03260 0.15 -1.2
653,387 - CSW01_03260 0.15 -0.3
653,389 - CSW01_03260 0.15 -1.2
653,391 + CSW01_03260 0.15 +0.2
653,391 + CSW01_03260 0.15 +1.2
653,391 + CSW01_03260 0.15 -0.4
653,391 + CSW01_03260 0.15 +1.6
653,391 + CSW01_03260 0.15 +1.0
653,391 + CSW01_03260 0.15 -0.0
653,391 + CSW01_03260 0.15 +0.4
653,391 + CSW01_03260 0.15 -0.4
653,391 + CSW01_03260 0.15 -1.7
653,392 - CSW01_03260 0.15 -0.1
653,392 - CSW01_03260 0.15 +0.5
653,399 - CSW01_03260 0.16 -1.0
653,399 - CSW01_03260 0.16 +0.3
653,399 - CSW01_03260 0.16 +0.4
653,399 - CSW01_03260 0.16 +0.7
653,399 - CSW01_03260 0.16 +0.4
653,399 - CSW01_03260 0.16 -0.2
653,399 - CSW01_03260 0.16 +1.5
653,404 - CSW01_03260 0.17 +0.6
653,415 + CSW01_03260 0.18 +0.2
653,488 - CSW01_03260 0.25 +0.1
653,490 + CSW01_03260 0.25 -0.4
653,505 + CSW01_03260 0.27 -0.4
653,513 - CSW01_03260 0.28 +0.5
653,513 - CSW01_03260 0.28 +0.7
653,513 - CSW01_03260 0.28 -0.8
653,513 - CSW01_03260 0.28 +0.3
653,513 - CSW01_03260 0.28 -0.4
653,531 + CSW01_03260 0.29 -3.4
653,531 + CSW01_03260 0.29 +0.3
653,533 + CSW01_03260 0.30 -0.7
653,539 + CSW01_03260 0.30 -1.4
653,581 - CSW01_03260 0.34 +0.2
653,608 + CSW01_03260 0.37 -0.9
653,629 + CSW01_03260 0.39 +0.2
653,637 - CSW01_03260 0.40 -0.2
653,676 + CSW01_03260 0.44 -1.5
653,710 + CSW01_03260 0.48 -0.8
653,710 + CSW01_03260 0.48 -0.2
653,712 - CSW01_03260 0.48 +0.4
653,725 + CSW01_03260 0.49 -1.0
653,743 - CSW01_03260 0.51 +0.2
653,865 + CSW01_03260 0.63 -0.2
653,870 + CSW01_03260 0.64 -0.8
653,870 + CSW01_03260 0.64 -2.4
653,870 + CSW01_03260 0.64 -2.3
653,870 + CSW01_03260 0.64 -2.6
653,878 - CSW01_03260 0.65 -1.0
653,878 - CSW01_03260 0.65 -0.9
653,911 + CSW01_03260 0.68 -0.2
653,928 + CSW01_03260 0.70 +0.2
653,938 + CSW01_03260 0.71 -0.1
653,938 + CSW01_03260 0.71 +1.0
653,990 + CSW01_03260 0.76 -0.1
653,998 - CSW01_03260 0.77 +0.4
653,998 - CSW01_03260 0.77 -1.5
654,007 + CSW01_03260 0.78 +0.2
654,015 - CSW01_03260 0.78 -0.5
654,017 + CSW01_03260 0.79 +0.3
654,019 + CSW01_03260 0.79 +0.2
654,024 + CSW01_03260 0.79 -2.0
654,065 + CSW01_03260 0.83 +0.9
654,083 + CSW01_03260 0.85 +2.4
654,117 + CSW01_03260 0.89 +0.0
654,170 - +0.4
654,229 + -0.6
654,229 + +0.1
654,229 + +0.6

Or see this region's nucleotide sequence