Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02645

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02630 and CSW01_02635 are separated by 63 nucleotidesCSW01_02635 and CSW01_02640 are separated by 81 nucleotidesCSW01_02640 and CSW01_02645 are separated by 80 nucleotidesCSW01_02645 and CSW01_02650 are separated by 502 nucleotides CSW01_02630: CSW01_02630 - inovirus Gp2 family protein, at 528,479 to 529,078 _02630 CSW01_02635: CSW01_02635 - AlpA family transcriptional regulator, at 529,142 to 529,342 _02635 CSW01_02640: CSW01_02640 - ribonuclease H, at 529,424 to 529,864 _02640 CSW01_02645: CSW01_02645 - IS3 family transposase, at 529,945 to 531,136 _02645 CSW01_02650: CSW01_02650 - IS5/IS1182 family transposase, at 531,639 to 532,549 _02650 Position (kb) 529 530 531 532Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 529.004 kb on + strand, within CSW01_02630at 529.012 kb on - strand, within CSW01_02630at 529.013 kb on + strand, within CSW01_02630at 529.026 kb on - strandat 529.068 kb on + strandat 529.076 kb on - strandat 529.076 kb on - strandat 529.080 kb on - strandat 529.094 kb on + strandat 529.099 kb on + strandat 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.181 kb on + strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.189 kb on - strand, within CSW01_02635at 529.215 kb on - strand, within CSW01_02635at 529.332 kb on + strandat 529.449 kb on + strandat 529.457 kb on - strandat 529.476 kb on - strand, within CSW01_02640at 529.481 kb on - strand, within CSW01_02640at 529.493 kb on - strand, within CSW01_02640at 529.516 kb on - strand, within CSW01_02640at 529.535 kb on - strand, within CSW01_02640at 529.545 kb on - strand, within CSW01_02640at 529.574 kb on - strand, within CSW01_02640at 529.588 kb on - strand, within CSW01_02640at 529.598 kb on + strand, within CSW01_02640at 529.598 kb on + strand, within CSW01_02640at 529.650 kb on - strand, within CSW01_02640at 529.688 kb on + strand, within CSW01_02640at 529.688 kb on + strand, within CSW01_02640at 529.694 kb on + strand, within CSW01_02640at 529.702 kb on - strand, within CSW01_02640at 529.761 kb on + strand, within CSW01_02640at 529.824 kb on - strandat 529.887 kb on + strandat 529.896 kb on - strandat 529.932 kb on - strandat 529.996 kb on + strandat 530.015 kb on + strandat 530.015 kb on + strandat 530.030 kb on + strandat 530.038 kb on - strandat 530.044 kb on + strandat 530.048 kb on - strandat 530.084 kb on - strand, within CSW01_02645at 530.101 kb on + strand, within CSW01_02645at 530.123 kb on + strand, within CSW01_02645at 530.217 kb on - strand, within CSW01_02645at 530.266 kb on - strand, within CSW01_02645at 530.273 kb on + strand, within CSW01_02645at 530.273 kb on + strand, within CSW01_02645at 530.281 kb on - strand, within CSW01_02645at 530.281 kb on - strand, within CSW01_02645at 530.281 kb on - strand, within CSW01_02645at 530.281 kb on - strand, within CSW01_02645at 530.314 kb on - strand, within CSW01_02645at 530.345 kb on + strand, within CSW01_02645at 530.353 kb on - strand, within CSW01_02645at 530.391 kb on + strand, within CSW01_02645at 530.393 kb on + strand, within CSW01_02645at 530.399 kb on - strand, within CSW01_02645at 530.402 kb on + strand, within CSW01_02645at 530.407 kb on + strand, within CSW01_02645at 530.407 kb on + strand, within CSW01_02645at 530.407 kb on + strand, within CSW01_02645at 530.415 kb on - strand, within CSW01_02645at 530.441 kb on + strand, within CSW01_02645at 530.469 kb on - strand, within CSW01_02645at 530.480 kb on + strand, within CSW01_02645at 530.546 kb on - strand, within CSW01_02645at 530.598 kb on + strand, within CSW01_02645at 530.598 kb on + strand, within CSW01_02645at 530.598 kb on + strand, within CSW01_02645at 530.606 kb on + strand, within CSW01_02645at 530.606 kb on - strand, within CSW01_02645at 530.648 kb on - strand, within CSW01_02645at 530.700 kb on + strand, within CSW01_02645at 530.700 kb on + strand, within CSW01_02645at 530.708 kb on - strand, within CSW01_02645at 530.708 kb on - strand, within CSW01_02645at 530.715 kb on - strand, within CSW01_02645at 530.751 kb on + strand, within CSW01_02645at 530.752 kb on - strand, within CSW01_02645at 530.756 kb on + strand, within CSW01_02645at 530.757 kb on - strand, within CSW01_02645at 530.764 kb on - strand, within CSW01_02645at 530.856 kb on - strand, within CSW01_02645at 530.938 kb on + strand, within CSW01_02645at 530.938 kb on + strand, within CSW01_02645at 530.951 kb on - strand, within CSW01_02645at 530.951 kb on - strand, within CSW01_02645at 531.117 kb on + strandat 531.130 kb on - strandat 531.173 kb on + strandat 531.173 kb on + strandat 531.173 kb on + strandat 531.173 kb on + strandat 531.173 kb on + strandat 531.173 kb on + strandat 531.173 kb on + strandat 531.181 kb on - strandat 531.181 kb on - strandat 531.181 kb on - strandat 531.283 kb on + strandat 531.283 kb on + strandat 531.288 kb on + strandat 531.296 kb on - strandat 531.296 kb on - strandat 531.296 kb on - strandat 531.305 kb on + strandat 531.305 kb on + strandat 531.310 kb on + strandat 531.345 kb on + strandat 531.356 kb on + strandat 531.385 kb on - strandat 531.387 kb on + strandat 531.387 kb on - strandat 531.437 kb on - strandat 531.485 kb on + strandat 531.551 kb on + strandat 531.557 kb on + strandat 531.565 kb on - strandat 531.620 kb on + strandat 531.620 kb on + strandat 531.620 kb on + strandat 531.620 kb on + strandat 531.623 kb on - strandat 531.628 kb on - strandat 531.663 kb on - strandat 531.663 kb on - strandat 531.666 kb on + strandat 531.691 kb on + strandat 531.774 kb on + strand, within CSW01_02650at 531.774 kb on + strand, within CSW01_02650at 531.774 kb on + strand, within CSW01_02650at 531.782 kb on - strand, within CSW01_02650at 531.926 kb on + strand, within CSW01_02650at 532.037 kb on + strand, within CSW01_02650at 532.037 kb on + strand, within CSW01_02650at 532.063 kb on - strand, within CSW01_02650at 532.095 kb on + strand, within CSW01_02650at 532.100 kb on + strand, within CSW01_02650at 532.134 kb on + strand, within CSW01_02650

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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529,004 + CSW01_02630 0.88 -1.0
529,012 - CSW01_02630 0.89 +0.3
529,013 + CSW01_02630 0.89 -0.3
529,026 - +0.1
529,068 + +0.5
529,076 - -1.5
529,076 - +0.9
529,080 - -0.4
529,094 + +0.0
529,099 + -0.1
529,181 + CSW01_02635 0.19 -1.2
529,181 + CSW01_02635 0.19 -0.8
529,181 + CSW01_02635 0.19 -0.7
529,181 + CSW01_02635 0.19 +0.8
529,181 + CSW01_02635 0.19 -0.4
529,181 + CSW01_02635 0.19 -1.4
529,181 + CSW01_02635 0.19 -0.4
529,181 + CSW01_02635 0.19 +0.1
529,181 + CSW01_02635 0.19 -0.0
529,181 + CSW01_02635 0.19 -1.2
529,181 + CSW01_02635 0.19 -0.2
529,181 + CSW01_02635 0.19 +0.6
529,181 + CSW01_02635 0.19 -2.2
529,189 - CSW01_02635 0.23 -2.7
529,189 - CSW01_02635 0.23 +0.6
529,189 - CSW01_02635 0.23 +0.2
529,189 - CSW01_02635 0.23 +0.3
529,189 - CSW01_02635 0.23 +0.9
529,189 - CSW01_02635 0.23 +0.7
529,189 - CSW01_02635 0.23 -3.4
529,189 - CSW01_02635 0.23 +0.5
529,189 - CSW01_02635 0.23 -2.8
529,189 - CSW01_02635 0.23 +1.0
529,189 - CSW01_02635 0.23 +0.4
529,215 - CSW01_02635 0.36 -0.9
529,332 + +1.0
529,449 + -0.0
529,457 - +0.0
529,476 - CSW01_02640 0.12 -0.0
529,481 - CSW01_02640 0.13 -0.0
529,493 - CSW01_02640 0.16 +1.7
529,516 - CSW01_02640 0.21 -1.1
529,535 - CSW01_02640 0.25 -0.5
529,545 - CSW01_02640 0.27 +0.4
529,574 - CSW01_02640 0.34 +2.1
529,588 - CSW01_02640 0.37 +0.1
529,598 + CSW01_02640 0.39 +0.3
529,598 + CSW01_02640 0.39 +0.6
529,650 - CSW01_02640 0.51 +0.5
529,688 + CSW01_02640 0.60 +0.3
529,688 + CSW01_02640 0.60 -0.6
529,694 + CSW01_02640 0.61 +0.6
529,702 - CSW01_02640 0.63 -0.7
529,761 + CSW01_02640 0.76 +0.6
529,824 - +0.2
529,887 + +1.1
529,896 - -1.0
529,932 - -3.0
529,996 + -2.1
530,015 + -0.1
530,015 + -0.2
530,030 + -0.0
530,038 - -2.5
530,044 + -0.4
530,048 - -0.4
530,084 - CSW01_02645 0.12 -0.2
530,101 + CSW01_02645 0.13 +0.8
530,123 + CSW01_02645 0.15 +2.7
530,217 - CSW01_02645 0.23 +2.1
530,266 - CSW01_02645 0.27 -0.9
530,273 + CSW01_02645 0.28 -1.8
530,273 + CSW01_02645 0.28 +0.1
530,281 - CSW01_02645 0.28 +0.2
530,281 - CSW01_02645 0.28 +2.3
530,281 - CSW01_02645 0.28 -0.5
530,281 - CSW01_02645 0.28 +0.1
530,314 - CSW01_02645 0.31 +0.7
530,345 + CSW01_02645 0.34 -0.9
530,353 - CSW01_02645 0.34 +0.5
530,391 + CSW01_02645 0.37 +0.2
530,393 + CSW01_02645 0.38 -0.2
530,399 - CSW01_02645 0.38 +0.3
530,402 + CSW01_02645 0.38 +0.2
530,407 + CSW01_02645 0.39 +1.6
530,407 + CSW01_02645 0.39 -0.9
530,407 + CSW01_02645 0.39 +0.1
530,415 - CSW01_02645 0.39 -1.6
530,441 + CSW01_02645 0.42 +0.1
530,469 - CSW01_02645 0.44 +0.0
530,480 + CSW01_02645 0.45 -0.2
530,546 - CSW01_02645 0.50 -0.0
530,598 + CSW01_02645 0.55 -0.2
530,598 + CSW01_02645 0.55 +0.1
530,598 + CSW01_02645 0.55 +0.9
530,606 + CSW01_02645 0.55 +0.9
530,606 - CSW01_02645 0.55 -1.0
530,648 - CSW01_02645 0.59 -0.2
530,700 + CSW01_02645 0.63 -1.0
530,700 + CSW01_02645 0.63 +0.4
530,708 - CSW01_02645 0.64 -2.2
530,708 - CSW01_02645 0.64 +0.8
530,715 - CSW01_02645 0.65 +0.0
530,751 + CSW01_02645 0.68 +0.2
530,752 - CSW01_02645 0.68 +0.9
530,756 + CSW01_02645 0.68 +1.0
530,757 - CSW01_02645 0.68 +0.6
530,764 - CSW01_02645 0.69 -0.2
530,856 - CSW01_02645 0.76 -0.5
530,938 + CSW01_02645 0.83 -0.3
530,938 + CSW01_02645 0.83 +0.4
530,951 - CSW01_02645 0.84 -0.4
530,951 - CSW01_02645 0.84 -0.7
531,117 + -1.7
531,130 - +0.6
531,173 + +1.8
531,173 + +0.0
531,173 + +2.0
531,173 + -0.9
531,173 + +0.1
531,173 + +0.6
531,173 + -0.3
531,181 - +0.0
531,181 - +0.2
531,181 - +1.1
531,283 + -0.2
531,283 + -0.3
531,288 + +1.0
531,296 - +0.6
531,296 - -0.6
531,296 - -0.1
531,305 + -0.4
531,305 + +0.1
531,310 + -1.0
531,345 + +0.3
531,356 + -0.9
531,385 - -0.2
531,387 + +0.1
531,387 - -1.7
531,437 - +0.5
531,485 + -1.2
531,551 + -0.7
531,557 + +1.3
531,565 - -0.2
531,620 + +0.7
531,620 + +1.3
531,620 + +0.2
531,620 + +0.0
531,623 - +0.2
531,628 - -0.1
531,663 - -2.5
531,663 - -0.4
531,666 + +0.5
531,691 + -0.4
531,774 + CSW01_02650 0.15 +0.0
531,774 + CSW01_02650 0.15 -1.4
531,774 + CSW01_02650 0.15 -0.4
531,782 - CSW01_02650 0.16 -0.1
531,926 + CSW01_02650 0.32 -0.4
532,037 + CSW01_02650 0.44 +0.5
532,037 + CSW01_02650 0.44 +0.6
532,063 - CSW01_02650 0.47 +0.2
532,095 + CSW01_02650 0.50 -1.6
532,100 + CSW01_02650 0.51 +0.7
532,134 + CSW01_02650 0.54 +0.2

Or see this region's nucleotide sequence