Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02500

Experiment: LB_Anaerobic_60MIN_ZN4B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_02490 and CSW01_02495 are separated by 13 nucleotidesCSW01_02495 and CSW01_02500 are separated by 137 nucleotidesCSW01_02500 and CSW01_02505 are separated by 127 nucleotidesCSW01_02505 and CSW01_02510 are separated by 121 nucleotides CSW01_02490: CSW01_02490 - glutathione synthetase, at 495,638 to 496,594 _02490 CSW01_02495: CSW01_02495 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 496,608 to 497,339 _02495 CSW01_02500: CSW01_02500 - deoxyribonuclease, at 497,477 to 498,172 _02500 CSW01_02505: CSW01_02505 - SprT family protein, at 498,300 to 498,788 _02505 CSW01_02510: CSW01_02510 - S-adenosylmethionine synthase, at 498,910 to 500,067 _02510 Position (kb) 497 498 499Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 496.512 kb on + strandat 496.521 kb on - strandat 496.612 kb on - strandat 496.629 kb on + strandat 496.642 kb on - strandat 496.679 kb on - strandat 496.717 kb on - strand, within CSW01_02495at 496.748 kb on - strand, within CSW01_02495at 496.759 kb on - strand, within CSW01_02495at 496.791 kb on + strand, within CSW01_02495at 496.797 kb on + strand, within CSW01_02495at 496.797 kb on + strand, within CSW01_02495at 496.798 kb on + strand, within CSW01_02495at 496.806 kb on - strand, within CSW01_02495at 496.856 kb on - strand, within CSW01_02495at 496.861 kb on - strand, within CSW01_02495at 496.864 kb on - strand, within CSW01_02495at 496.911 kb on - strand, within CSW01_02495at 496.911 kb on - strand, within CSW01_02495at 496.993 kb on + strand, within CSW01_02495at 497.003 kb on - strand, within CSW01_02495at 497.009 kb on + strand, within CSW01_02495at 497.017 kb on - strand, within CSW01_02495at 497.017 kb on - strand, within CSW01_02495at 497.114 kb on + strand, within CSW01_02495at 497.138 kb on + strand, within CSW01_02495at 497.173 kb on + strand, within CSW01_02495at 497.214 kb on + strand, within CSW01_02495at 497.264 kb on - strand, within CSW01_02495at 497.264 kb on - strand, within CSW01_02495at 497.282 kb on + strandat 497.298 kb on - strandat 497.299 kb on - strandat 497.373 kb on - strandat 497.373 kb on - strandat 497.388 kb on + strandat 497.396 kb on - strandat 497.396 kb on - strandat 497.402 kb on - strandat 497.407 kb on + strandat 497.524 kb on - strandat 497.524 kb on - strandat 497.526 kb on + strandat 497.608 kb on - strand, within CSW01_02500at 497.617 kb on + strand, within CSW01_02500at 497.627 kb on + strand, within CSW01_02500at 497.637 kb on + strand, within CSW01_02500at 497.637 kb on + strand, within CSW01_02500at 497.637 kb on + strand, within CSW01_02500at 497.645 kb on - strand, within CSW01_02500at 497.645 kb on - strand, within CSW01_02500at 497.645 kb on - strand, within CSW01_02500at 497.659 kb on + strand, within CSW01_02500at 497.694 kb on - strand, within CSW01_02500at 497.728 kb on + strand, within CSW01_02500at 497.736 kb on - strand, within CSW01_02500at 497.736 kb on - strand, within CSW01_02500at 497.809 kb on + strand, within CSW01_02500at 497.827 kb on - strand, within CSW01_02500at 497.827 kb on - strand, within CSW01_02500at 497.840 kb on + strand, within CSW01_02500at 497.845 kb on + strand, within CSW01_02500at 497.850 kb on + strand, within CSW01_02500at 497.858 kb on - strand, within CSW01_02500at 497.919 kb on + strand, within CSW01_02500at 497.926 kb on - strand, within CSW01_02500at 497.927 kb on - strand, within CSW01_02500at 497.974 kb on + strand, within CSW01_02500at 497.982 kb on - strand, within CSW01_02500at 498.084 kb on + strand, within CSW01_02500at 498.119 kb on + strandat 498.119 kb on + strandat 498.127 kb on - strandat 498.203 kb on + strandat 498.211 kb on - strandat 498.211 kb on - strandat 498.257 kb on + strandat 498.290 kb on - strandat 498.305 kb on - strandat 498.339 kb on + strandat 498.360 kb on - strand, within CSW01_02505at 498.364 kb on + strand, within CSW01_02505at 498.385 kb on - strand, within CSW01_02505at 498.424 kb on + strand, within CSW01_02505at 498.429 kb on + strand, within CSW01_02505at 498.432 kb on - strand, within CSW01_02505at 498.432 kb on - strand, within CSW01_02505at 498.432 kb on - strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.485 kb on - strand, within CSW01_02505at 498.524 kb on - strand, within CSW01_02505at 498.646 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.711 kb on + strand, within CSW01_02505at 498.711 kb on + strand, within CSW01_02505at 498.758 kb on + strandat 498.758 kb on + strandat 498.760 kb on + strandat 498.760 kb on + strandat 498.768 kb on - strandat 498.768 kb on - strandat 498.776 kb on - strandat 498.855 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
remove
496,512 + +0.1
496,521 - -0.6
496,612 - -0.0
496,629 + -0.6
496,642 - -0.0
496,679 - +0.3
496,717 - CSW01_02495 0.15 +2.1
496,748 - CSW01_02495 0.19 +0.2
496,759 - CSW01_02495 0.21 -0.5
496,791 + CSW01_02495 0.25 +0.6
496,797 + CSW01_02495 0.26 +1.6
496,797 + CSW01_02495 0.26 -1.9
496,798 + CSW01_02495 0.26 +0.8
496,806 - CSW01_02495 0.27 +2.1
496,856 - CSW01_02495 0.34 -0.4
496,861 - CSW01_02495 0.35 -0.1
496,864 - CSW01_02495 0.35 -0.6
496,911 - CSW01_02495 0.41 -0.6
496,911 - CSW01_02495 0.41 +0.6
496,993 + CSW01_02495 0.53 +0.4
497,003 - CSW01_02495 0.54 -0.1
497,009 + CSW01_02495 0.55 +0.6
497,017 - CSW01_02495 0.56 -0.1
497,017 - CSW01_02495 0.56 -0.3
497,114 + CSW01_02495 0.69 -1.6
497,138 + CSW01_02495 0.72 -0.5
497,173 + CSW01_02495 0.77 +0.7
497,214 + CSW01_02495 0.83 +0.7
497,264 - CSW01_02495 0.90 -0.7
497,264 - CSW01_02495 0.90 +0.6
497,282 + +1.0
497,298 - +1.1
497,299 - -0.4
497,373 - +0.5
497,373 - -1.6
497,388 + -1.0
497,396 - +1.1
497,396 - -0.3
497,402 - +0.6
497,407 + -3.0
497,524 - -0.2
497,524 - +0.2
497,526 + -0.7
497,608 - CSW01_02500 0.19 +0.6
497,617 + CSW01_02500 0.20 -0.5
497,627 + CSW01_02500 0.22 -0.3
497,637 + CSW01_02500 0.23 -1.6
497,637 + CSW01_02500 0.23 +0.5
497,637 + CSW01_02500 0.23 +0.2
497,645 - CSW01_02500 0.24 -0.0
497,645 - CSW01_02500 0.24 +1.1
497,645 - CSW01_02500 0.24 -0.3
497,659 + CSW01_02500 0.26 +1.2
497,694 - CSW01_02500 0.31 +0.1
497,728 + CSW01_02500 0.36 +0.5
497,736 - CSW01_02500 0.37 +0.4
497,736 - CSW01_02500 0.37 +0.5
497,809 + CSW01_02500 0.48 +0.7
497,827 - CSW01_02500 0.50 +1.1
497,827 - CSW01_02500 0.50 +0.8
497,840 + CSW01_02500 0.52 -1.3
497,845 + CSW01_02500 0.53 -0.4
497,850 + CSW01_02500 0.54 -0.2
497,858 - CSW01_02500 0.55 +0.5
497,919 + CSW01_02500 0.64 -0.7
497,926 - CSW01_02500 0.65 +0.7
497,927 - CSW01_02500 0.65 +0.1
497,974 + CSW01_02500 0.71 +0.3
497,982 - CSW01_02500 0.73 +0.2
498,084 + CSW01_02500 0.87 +0.2
498,119 + -1.3
498,119 + +0.4
498,127 - -0.2
498,203 + +0.6
498,211 - -0.0
498,211 - +0.1
498,257 + -0.1
498,290 - +0.3
498,305 - +0.4
498,339 + +0.0
498,360 - CSW01_02505 0.12 -0.2
498,364 + CSW01_02505 0.13 +0.4
498,385 - CSW01_02505 0.17 +1.4
498,424 + CSW01_02505 0.25 -0.0
498,429 + CSW01_02505 0.26 +0.2
498,432 - CSW01_02505 0.27 -0.6
498,432 - CSW01_02505 0.27 -0.1
498,432 - CSW01_02505 0.27 -0.5
498,434 + CSW01_02505 0.27 +0.1
498,434 + CSW01_02505 0.27 -1.1
498,434 + CSW01_02505 0.27 +1.3
498,434 + CSW01_02505 0.27 +0.7
498,434 + CSW01_02505 0.27 -0.4
498,434 + CSW01_02505 0.27 +0.8
498,442 - CSW01_02505 0.29 -0.3
498,442 - CSW01_02505 0.29 -0.1
498,442 - CSW01_02505 0.29 -0.6
498,442 - CSW01_02505 0.29 +0.7
498,442 - CSW01_02505 0.29 -0.1
498,442 - CSW01_02505 0.29 -0.3
498,485 - CSW01_02505 0.38 +0.3
498,524 - CSW01_02505 0.46 +1.4
498,646 + CSW01_02505 0.71 +0.2
498,698 + CSW01_02505 0.81 +0.5
498,698 + CSW01_02505 0.81 -0.1
498,698 + CSW01_02505 0.81 -1.6
498,698 + CSW01_02505 0.81 +0.3
498,698 + CSW01_02505 0.81 -1.2
498,698 + CSW01_02505 0.81 +1.1
498,698 + CSW01_02505 0.81 -0.1
498,698 + CSW01_02505 0.81 +0.4
498,706 - CSW01_02505 0.83 -0.1
498,706 - CSW01_02505 0.83 -0.6
498,706 - CSW01_02505 0.83 -0.2
498,706 - CSW01_02505 0.83 -0.8
498,706 - CSW01_02505 0.83 -0.4
498,706 - CSW01_02505 0.83 -0.3
498,706 - CSW01_02505 0.83 -1.0
498,706 - CSW01_02505 0.83 +1.3
498,706 - CSW01_02505 0.83 +0.1
498,706 - CSW01_02505 0.83 -3.0
498,706 - CSW01_02505 0.83 -0.4
498,706 - CSW01_02505 0.83 -1.0
498,706 - CSW01_02505 0.83 -0.1
498,711 + CSW01_02505 0.84 +0.9
498,711 + CSW01_02505 0.84 +0.0
498,758 + -0.9
498,758 + -0.0
498,760 + -1.0
498,760 + +0.0
498,768 - -2.6
498,768 - -1.6
498,776 - +1.2
498,855 + +0.1

Or see this region's nucleotide sequence