Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02490

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02480 and CSW01_02485 are separated by 80 nucleotidesCSW01_02485 and CSW01_02490 are separated by 35 nucleotidesCSW01_02490 and CSW01_02495 are separated by 13 nucleotidesCSW01_02495 and CSW01_02500 are separated by 137 nucleotides CSW01_02480: CSW01_02480 - Holliday junction resolvase RuvX, at 494,536 to 494,958 _02480 CSW01_02485: CSW01_02485 - YqgE/AlgH family protein, at 495,039 to 495,602 _02485 CSW01_02490: CSW01_02490 - glutathione synthetase, at 495,638 to 496,594 _02490 CSW01_02495: CSW01_02495 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 496,608 to 497,339 _02495 CSW01_02500: CSW01_02500 - deoxyribonuclease, at 497,477 to 498,172 _02500 Position (kb) 495 496 497Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 495.068 kb on + strandat 495.068 kb on + strandat 495.068 kb on + strandat 495.071 kb on - strandat 495.100 kb on - strand, within CSW01_02485at 495.157 kb on - strand, within CSW01_02485at 495.160 kb on + strand, within CSW01_02485at 495.211 kb on + strand, within CSW01_02485at 495.255 kb on + strand, within CSW01_02485at 495.255 kb on + strand, within CSW01_02485at 495.263 kb on - strand, within CSW01_02485at 495.263 kb on - strand, within CSW01_02485at 495.305 kb on - strand, within CSW01_02485at 495.331 kb on - strand, within CSW01_02485at 495.350 kb on - strand, within CSW01_02485at 495.487 kb on - strand, within CSW01_02485at 495.516 kb on - strand, within CSW01_02485at 495.596 kb on + strandat 495.596 kb on + strandat 495.596 kb on + strandat 495.596 kb on + strandat 495.596 kb on + strandat 495.604 kb on - strandat 495.604 kb on - strandat 495.604 kb on - strandat 495.604 kb on - strandat 495.604 kb on - strandat 495.614 kb on - strandat 495.622 kb on - strandat 495.625 kb on + strandat 495.644 kb on - strandat 495.672 kb on + strandat 495.701 kb on + strandat 495.711 kb on + strandat 495.890 kb on - strand, within CSW01_02490at 495.944 kb on - strand, within CSW01_02490at 495.998 kb on + strand, within CSW01_02490at 496.006 kb on - strand, within CSW01_02490at 496.006 kb on - strand, within CSW01_02490at 496.006 kb on - strand, within CSW01_02490at 496.136 kb on - strand, within CSW01_02490at 496.138 kb on - strand, within CSW01_02490at 496.149 kb on + strand, within CSW01_02490at 496.149 kb on + strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.157 kb on - strand, within CSW01_02490at 496.241 kb on + strand, within CSW01_02490at 496.307 kb on + strand, within CSW01_02490at 496.315 kb on - strand, within CSW01_02490at 496.374 kb on - strand, within CSW01_02490at 496.391 kb on - strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.444 kb on + strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.452 kb on - strand, within CSW01_02490at 496.459 kb on - strand, within CSW01_02490at 496.463 kb on + strand, within CSW01_02490at 496.512 kb on + strandat 496.521 kb on - strandat 496.612 kb on - strandat 496.629 kb on + strandat 496.642 kb on - strandat 496.679 kb on - strandat 496.717 kb on - strand, within CSW01_02495at 496.748 kb on - strand, within CSW01_02495at 496.759 kb on - strand, within CSW01_02495at 496.791 kb on + strand, within CSW01_02495at 496.797 kb on + strand, within CSW01_02495at 496.797 kb on + strand, within CSW01_02495at 496.798 kb on + strand, within CSW01_02495at 496.806 kb on - strand, within CSW01_02495at 496.856 kb on - strand, within CSW01_02495at 496.861 kb on - strand, within CSW01_02495at 496.864 kb on - strand, within CSW01_02495at 496.911 kb on - strand, within CSW01_02495at 496.911 kb on - strand, within CSW01_02495at 496.993 kb on + strand, within CSW01_02495at 497.003 kb on - strand, within CSW01_02495at 497.009 kb on + strand, within CSW01_02495at 497.017 kb on - strand, within CSW01_02495at 497.017 kb on - strand, within CSW01_02495at 497.114 kb on + strand, within CSW01_02495at 497.138 kb on + strand, within CSW01_02495at 497.173 kb on + strand, within CSW01_02495at 497.214 kb on + strand, within CSW01_02495at 497.264 kb on - strand, within CSW01_02495at 497.264 kb on - strand, within CSW01_02495at 497.282 kb on + strandat 497.298 kb on - strandat 497.299 kb on - strandat 497.373 kb on - strandat 497.373 kb on - strandat 497.388 kb on + strandat 497.396 kb on - strandat 497.396 kb on - strandat 497.402 kb on - strandat 497.407 kb on + strandat 497.524 kb on - strandat 497.524 kb on - strandat 497.526 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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495,068 + +1.4
495,068 + +0.0
495,068 + -0.3
495,071 - -0.2
495,100 - CSW01_02485 0.11 +0.1
495,157 - CSW01_02485 0.21 -1.0
495,160 + CSW01_02485 0.21 -1.0
495,211 + CSW01_02485 0.30 +0.1
495,255 + CSW01_02485 0.38 -0.1
495,255 + CSW01_02485 0.38 +0.0
495,263 - CSW01_02485 0.40 -0.3
495,263 - CSW01_02485 0.40 -0.8
495,305 - CSW01_02485 0.47 +0.8
495,331 - CSW01_02485 0.52 -0.2
495,350 - CSW01_02485 0.55 -1.1
495,487 - CSW01_02485 0.79 -0.1
495,516 - CSW01_02485 0.85 +1.2
495,596 + -0.1
495,596 + +0.5
495,596 + -0.7
495,596 + -0.4
495,596 + -0.3
495,604 - +0.1
495,604 - +0.7
495,604 - -0.8
495,604 - +1.0
495,604 - +1.0
495,614 - -0.4
495,622 - -2.2
495,625 + +0.4
495,644 - -0.3
495,672 + +0.0
495,701 + -1.2
495,711 + +1.5
495,890 - CSW01_02490 0.26 -3.7
495,944 - CSW01_02490 0.32 +0.4
495,998 + CSW01_02490 0.38 -2.2
496,006 - CSW01_02490 0.38 +0.4
496,006 - CSW01_02490 0.38 -1.7
496,006 - CSW01_02490 0.38 +1.0
496,136 - CSW01_02490 0.52 -2.0
496,138 - CSW01_02490 0.52 -0.3
496,149 + CSW01_02490 0.53 -3.2
496,149 + CSW01_02490 0.53 -0.9
496,157 - CSW01_02490 0.54 -2.2
496,157 - CSW01_02490 0.54 -0.0
496,157 - CSW01_02490 0.54 -0.6
496,157 - CSW01_02490 0.54 +0.4
496,157 - CSW01_02490 0.54 -3.3
496,157 - CSW01_02490 0.54 +0.5
496,157 - CSW01_02490 0.54 -1.6
496,241 + CSW01_02490 0.63 +2.1
496,307 + CSW01_02490 0.70 -2.0
496,315 - CSW01_02490 0.71 -1.2
496,374 - CSW01_02490 0.77 +0.4
496,391 - CSW01_02490 0.79 -2.1
496,444 + CSW01_02490 0.84 -1.6
496,444 + CSW01_02490 0.84 -2.8
496,444 + CSW01_02490 0.84 +0.9
496,444 + CSW01_02490 0.84 +0.4
496,444 + CSW01_02490 0.84 +0.4
496,444 + CSW01_02490 0.84 -1.4
496,452 - CSW01_02490 0.85 -0.6
496,452 - CSW01_02490 0.85 +1.7
496,452 - CSW01_02490 0.85 -3.1
496,452 - CSW01_02490 0.85 +0.2
496,452 - CSW01_02490 0.85 +0.4
496,452 - CSW01_02490 0.85 -2.8
496,452 - CSW01_02490 0.85 +0.0
496,452 - CSW01_02490 0.85 -0.2
496,452 - CSW01_02490 0.85 +1.4
496,452 - CSW01_02490 0.85 +1.4
496,459 - CSW01_02490 0.86 +0.4
496,463 + CSW01_02490 0.86 -1.2
496,512 + +0.1
496,521 - -0.6
496,612 - -0.0
496,629 + -0.6
496,642 - -0.0
496,679 - +0.3
496,717 - CSW01_02495 0.15 +2.1
496,748 - CSW01_02495 0.19 +0.2
496,759 - CSW01_02495 0.21 -0.5
496,791 + CSW01_02495 0.25 +0.6
496,797 + CSW01_02495 0.26 +1.6
496,797 + CSW01_02495 0.26 -1.9
496,798 + CSW01_02495 0.26 +0.8
496,806 - CSW01_02495 0.27 +2.1
496,856 - CSW01_02495 0.34 -0.4
496,861 - CSW01_02495 0.35 -0.1
496,864 - CSW01_02495 0.35 -0.6
496,911 - CSW01_02495 0.41 -0.6
496,911 - CSW01_02495 0.41 +0.6
496,993 + CSW01_02495 0.53 +0.4
497,003 - CSW01_02495 0.54 -0.1
497,009 + CSW01_02495 0.55 +0.6
497,017 - CSW01_02495 0.56 -0.1
497,017 - CSW01_02495 0.56 -0.3
497,114 + CSW01_02495 0.69 -1.6
497,138 + CSW01_02495 0.72 -0.5
497,173 + CSW01_02495 0.77 +0.7
497,214 + CSW01_02495 0.83 +0.7
497,264 - CSW01_02495 0.90 -0.7
497,264 - CSW01_02495 0.90 +0.6
497,282 + +1.0
497,298 - +1.1
497,299 - -0.4
497,373 - +0.5
497,373 - -1.6
497,388 + -1.0
497,396 - +1.1
497,396 - -0.3
497,402 - +0.6
497,407 + -3.0
497,524 - -0.2
497,524 - +0.2
497,526 + -0.7

Or see this region's nucleotide sequence