Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02110

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02105 and CSW01_02110 overlap by 4 nucleotidesCSW01_02110 and CSW01_02115 overlap by 8 nucleotidesCSW01_02115 and CSW01_02120 are separated by 14 nucleotides CSW01_02105: CSW01_02105 - MSHA biogenesis protein MshI, at 424,037 to 425,476 _02105 CSW01_02110: CSW01_02110 - MSHA biogenesis protein MshJ, at 425,473 to 426,123 _02110 CSW01_02115: CSW01_02115 - MSHA biogenesis protein MshK, at 426,116 to 426,433 _02115 CSW01_02120: CSW01_02120 - pilus (MSHA type) biogenesis protein MshL, at 426,448 to 428,127 _02120 Position (kb) 425 426 427Strain fitness (log2 ratio) -2 -1 0 1 2 3at 424.474 kb on - strand, within CSW01_02105at 424.474 kb on - strand, within CSW01_02105at 424.574 kb on - strand, within CSW01_02105at 424.574 kb on - strand, within CSW01_02105at 424.605 kb on - strand, within CSW01_02105at 424.610 kb on - strand, within CSW01_02105at 424.685 kb on + strand, within CSW01_02105at 424.693 kb on - strand, within CSW01_02105at 424.693 kb on - strand, within CSW01_02105at 424.700 kb on + strand, within CSW01_02105at 424.708 kb on - strand, within CSW01_02105at 424.720 kb on + strand, within CSW01_02105at 424.720 kb on + strand, within CSW01_02105at 424.728 kb on - strand, within CSW01_02105at 424.734 kb on + strand, within CSW01_02105at 424.734 kb on + strand, within CSW01_02105at 424.734 kb on + strand, within CSW01_02105at 424.742 kb on - strand, within CSW01_02105at 424.742 kb on - strand, within CSW01_02105at 424.742 kb on - strand, within CSW01_02105at 424.742 kb on - strand, within CSW01_02105at 424.743 kb on + strand, within CSW01_02105at 424.778 kb on + strand, within CSW01_02105at 424.801 kb on + strand, within CSW01_02105at 424.801 kb on + strand, within CSW01_02105at 424.818 kb on + strand, within CSW01_02105at 424.818 kb on + strand, within CSW01_02105at 424.826 kb on - strand, within CSW01_02105at 424.826 kb on - strand, within CSW01_02105at 424.964 kb on + strand, within CSW01_02105at 424.973 kb on - strand, within CSW01_02105at 424.982 kb on + strand, within CSW01_02105at 425.003 kb on + strand, within CSW01_02105at 425.006 kb on - strand, within CSW01_02105at 425.040 kb on + strand, within CSW01_02105at 425.048 kb on - strand, within CSW01_02105at 425.181 kb on + strand, within CSW01_02105at 425.190 kb on + strand, within CSW01_02105at 425.198 kb on - strand, within CSW01_02105at 425.198 kb on - strand, within CSW01_02105at 425.283 kb on + strand, within CSW01_02105at 425.283 kb on + strand, within CSW01_02105at 425.289 kb on - strand, within CSW01_02105at 425.429 kb on + strandat 425.439 kb on + strandat 425.439 kb on + strandat 425.446 kb on + strandat 425.447 kb on - strandat 425.447 kb on - strandat 425.447 kb on - strandat 425.447 kb on - strandat 425.547 kb on + strand, within CSW01_02110at 425.547 kb on + strand, within CSW01_02110at 425.555 kb on - strand, within CSW01_02110at 425.555 kb on - strand, within CSW01_02110at 425.555 kb on - strand, within CSW01_02110at 425.574 kb on - strand, within CSW01_02110at 425.585 kb on + strand, within CSW01_02110at 425.597 kb on - strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.600 kb on + strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.608 kb on - strand, within CSW01_02110at 425.723 kb on + strand, within CSW01_02110at 425.811 kb on - strand, within CSW01_02110at 425.875 kb on - strand, within CSW01_02110at 425.953 kb on + strand, within CSW01_02110at 425.989 kb on + strand, within CSW01_02110at 426.004 kb on - strand, within CSW01_02110at 426.063 kb on + strandat 426.071 kb on - strandat 426.081 kb on + strandat 426.082 kb on + strandat 426.096 kb on - strandat 426.098 kb on + strandat 426.098 kb on + strandat 426.098 kb on + strandat 426.128 kb on + strandat 426.131 kb on - strandat 426.155 kb on + strand, within CSW01_02115at 426.184 kb on - strand, within CSW01_02115at 426.188 kb on + strand, within CSW01_02115at 426.188 kb on + strand, within CSW01_02115at 426.206 kb on - strand, within CSW01_02115at 426.251 kb on + strand, within CSW01_02115at 426.258 kb on + strand, within CSW01_02115at 426.261 kb on - strand, within CSW01_02115at 426.293 kb on - strand, within CSW01_02115at 426.293 kb on - strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.314 kb on + strand, within CSW01_02115at 426.319 kb on + strand, within CSW01_02115at 426.321 kb on + strand, within CSW01_02115at 426.322 kb on - strand, within CSW01_02115at 426.386 kb on + strand, within CSW01_02115at 426.386 kb on + strand, within CSW01_02115at 426.394 kb on - strand, within CSW01_02115at 426.394 kb on - strand, within CSW01_02115at 426.420 kb on + strandat 426.428 kb on - strandat 426.428 kb on - strandat 426.428 kb on - strandat 426.467 kb on + strandat 426.515 kb on - strandat 426.532 kb on + strandat 426.639 kb on + strand, within CSW01_02120at 426.693 kb on - strand, within CSW01_02120at 426.711 kb on + strand, within CSW01_02120at 426.718 kb on + strand, within CSW01_02120at 426.718 kb on + strand, within CSW01_02120at 426.718 kb on + strand, within CSW01_02120at 426.763 kb on + strand, within CSW01_02120at 426.779 kb on + strand, within CSW01_02120at 426.779 kb on + strand, within CSW01_02120at 426.779 kb on + strand, within CSW01_02120at 426.787 kb on - strand, within CSW01_02120at 426.796 kb on + strand, within CSW01_02120at 426.804 kb on - strand, within CSW01_02120at 426.824 kb on + strand, within CSW01_02120at 426.824 kb on + strand, within CSW01_02120at 426.824 kb on + strand, within CSW01_02120at 426.832 kb on - strand, within CSW01_02120at 426.832 kb on - strand, within CSW01_02120at 426.832 kb on - strand, within CSW01_02120at 426.929 kb on + strand, within CSW01_02120at 426.930 kb on - strand, within CSW01_02120at 427.036 kb on + strand, within CSW01_02120

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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424,474 - CSW01_02105 0.30 +0.3
424,474 - CSW01_02105 0.30 +2.9
424,574 - CSW01_02105 0.37 +0.9
424,574 - CSW01_02105 0.37 +0.1
424,605 - CSW01_02105 0.39 +0.3
424,610 - CSW01_02105 0.40 -0.7
424,685 + CSW01_02105 0.45 -0.1
424,693 - CSW01_02105 0.46 +1.1
424,693 - CSW01_02105 0.46 -2.2
424,700 + CSW01_02105 0.46 +0.6
424,708 - CSW01_02105 0.47 -0.9
424,720 + CSW01_02105 0.47 +0.1
424,720 + CSW01_02105 0.47 -0.2
424,728 - CSW01_02105 0.48 +1.7
424,734 + CSW01_02105 0.48 +0.6
424,734 + CSW01_02105 0.48 +0.2
424,734 + CSW01_02105 0.48 -2.0
424,742 - CSW01_02105 0.49 -1.3
424,742 - CSW01_02105 0.49 +0.2
424,742 - CSW01_02105 0.49 +1.0
424,742 - CSW01_02105 0.49 +0.8
424,743 + CSW01_02105 0.49 +0.3
424,778 + CSW01_02105 0.51 +0.5
424,801 + CSW01_02105 0.53 +1.1
424,801 + CSW01_02105 0.53 +0.5
424,818 + CSW01_02105 0.54 +0.6
424,818 + CSW01_02105 0.54 +0.8
424,826 - CSW01_02105 0.55 +0.3
424,826 - CSW01_02105 0.55 -0.2
424,964 + CSW01_02105 0.64 -0.2
424,973 - CSW01_02105 0.65 +0.2
424,982 + CSW01_02105 0.66 +0.2
425,003 + CSW01_02105 0.67 +0.2
425,006 - CSW01_02105 0.67 +0.5
425,040 + CSW01_02105 0.70 +0.4
425,048 - CSW01_02105 0.70 +0.7
425,181 + CSW01_02105 0.79 +0.4
425,190 + CSW01_02105 0.80 -0.6
425,198 - CSW01_02105 0.81 -1.5
425,198 - CSW01_02105 0.81 -0.6
425,283 + CSW01_02105 0.87 +0.8
425,283 + CSW01_02105 0.87 +0.4
425,289 - CSW01_02105 0.87 +1.4
425,429 + +0.3
425,439 + +0.5
425,439 + -0.2
425,446 + +1.1
425,447 - +0.7
425,447 - +0.4
425,447 - +0.3
425,447 - -2.1
425,547 + CSW01_02110 0.11 -0.1
425,547 + CSW01_02110 0.11 +0.1
425,555 - CSW01_02110 0.13 +0.8
425,555 - CSW01_02110 0.13 +0.9
425,555 - CSW01_02110 0.13 +0.4
425,574 - CSW01_02110 0.16 +2.9
425,585 + CSW01_02110 0.17 +0.9
425,597 - CSW01_02110 0.19 +1.2
425,600 + CSW01_02110 0.20 +0.7
425,600 + CSW01_02110 0.20 +2.7
425,600 + CSW01_02110 0.20 +0.4
425,600 + CSW01_02110 0.20 +1.2
425,600 + CSW01_02110 0.20 +0.4
425,600 + CSW01_02110 0.20 -0.2
425,600 + CSW01_02110 0.20 +0.4
425,600 + CSW01_02110 0.20 +1.3
425,600 + CSW01_02110 0.20 +0.3
425,608 - CSW01_02110 0.21 -0.2
425,608 - CSW01_02110 0.21 +1.1
425,608 - CSW01_02110 0.21 +0.3
425,608 - CSW01_02110 0.21 +0.8
425,608 - CSW01_02110 0.21 +0.9
425,723 + CSW01_02110 0.38 -0.8
425,811 - CSW01_02110 0.52 -1.4
425,875 - CSW01_02110 0.62 -1.3
425,953 + CSW01_02110 0.74 +0.6
425,989 + CSW01_02110 0.79 -0.2
426,004 - CSW01_02110 0.82 +0.9
426,063 + +0.7
426,071 - -0.8
426,081 + -1.3
426,082 + +0.8
426,096 - +0.4
426,098 + -0.1
426,098 + +0.9
426,098 + +0.6
426,128 + +0.4
426,131 - +0.6
426,155 + CSW01_02115 0.12 +1.4
426,184 - CSW01_02115 0.21 +0.6
426,188 + CSW01_02115 0.23 +0.4
426,188 + CSW01_02115 0.23 +0.8
426,206 - CSW01_02115 0.28 +1.5
426,251 + CSW01_02115 0.42 +0.4
426,258 + CSW01_02115 0.45 -1.2
426,261 - CSW01_02115 0.46 +0.8
426,293 - CSW01_02115 0.56 +0.6
426,293 - CSW01_02115 0.56 +1.0
426,314 + CSW01_02115 0.62 +0.4
426,314 + CSW01_02115 0.62 +0.5
426,314 + CSW01_02115 0.62 +0.4
426,314 + CSW01_02115 0.62 +0.4
426,319 + CSW01_02115 0.64 +0.3
426,321 + CSW01_02115 0.64 +1.1
426,322 - CSW01_02115 0.65 -0.6
426,386 + CSW01_02115 0.85 +0.3
426,386 + CSW01_02115 0.85 +0.6
426,394 - CSW01_02115 0.87 -1.1
426,394 - CSW01_02115 0.87 +0.1
426,420 + +0.0
426,428 - -0.9
426,428 - -0.1
426,428 - +0.7
426,467 + +1.4
426,515 - +0.2
426,532 + +0.2
426,639 + CSW01_02120 0.11 +0.4
426,693 - CSW01_02120 0.15 -0.1
426,711 + CSW01_02120 0.16 -0.6
426,718 + CSW01_02120 0.16 -2.6
426,718 + CSW01_02120 0.16 -0.1
426,718 + CSW01_02120 0.16 +0.5
426,763 + CSW01_02120 0.19 -0.3
426,779 + CSW01_02120 0.20 +0.5
426,779 + CSW01_02120 0.20 +0.3
426,779 + CSW01_02120 0.20 -0.4
426,787 - CSW01_02120 0.20 +0.4
426,796 + CSW01_02120 0.21 +0.2
426,804 - CSW01_02120 0.21 +0.5
426,824 + CSW01_02120 0.22 +0.5
426,824 + CSW01_02120 0.22 -0.0
426,824 + CSW01_02120 0.22 +0.8
426,832 - CSW01_02120 0.23 +2.9
426,832 - CSW01_02120 0.23 +2.8
426,832 - CSW01_02120 0.23 +0.3
426,929 + CSW01_02120 0.29 -1.0
426,930 - CSW01_02120 0.29 +0.0
427,036 + CSW01_02120 0.35 +1.0

Or see this region's nucleotide sequence