Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01715

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01705 and CSW01_01710 are separated by 110 nucleotidesCSW01_01710 and CSW01_01715 are separated by 144 nucleotidesCSW01_01715 and CSW01_01720 are separated by 242 nucleotides CSW01_01705: CSW01_01705 - DNA-directed RNA polymerase subunit beta', at 343,244 to 347,449 _01705 CSW01_01710: CSW01_01710 - Rsd/AlgQ family anti-sigma factor, at 347,560 to 348,054 _01710 CSW01_01715: CSW01_01715 - NADH pyrophosphatase, at 348,199 to 349,008 _01715 CSW01_01720: CSW01_01720 - uroporphyrinogen decarboxylase, at 349,251 to 350,330 _01720 Position (kb) 348 349 350Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 347.479 kb on + strandat 347.557 kb on + strandat 347.585 kb on - strandat 347.626 kb on + strand, within CSW01_01710at 347.669 kb on + strand, within CSW01_01710at 347.781 kb on + strand, within CSW01_01710at 347.789 kb on - strand, within CSW01_01710at 347.878 kb on - strand, within CSW01_01710at 347.888 kb on + strand, within CSW01_01710at 347.888 kb on + strand, within CSW01_01710at 348.001 kb on + strand, within CSW01_01710at 348.076 kb on - strandat 348.274 kb on - strandat 348.285 kb on + strand, within CSW01_01715at 348.320 kb on + strand, within CSW01_01715at 348.325 kb on + strand, within CSW01_01715at 348.375 kb on + strand, within CSW01_01715at 348.382 kb on + strand, within CSW01_01715at 348.390 kb on - strand, within CSW01_01715at 348.582 kb on - strand, within CSW01_01715at 348.595 kb on + strand, within CSW01_01715at 348.595 kb on + strand, within CSW01_01715at 348.595 kb on + strand, within CSW01_01715at 348.631 kb on - strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.688 kb on + strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.696 kb on - strand, within CSW01_01715at 348.727 kb on - strand, within CSW01_01715at 348.731 kb on + strand, within CSW01_01715at 348.731 kb on + strand, within CSW01_01715at 348.733 kb on + strand, within CSW01_01715at 348.739 kb on - strand, within CSW01_01715at 348.739 kb on - strand, within CSW01_01715at 348.739 kb on - strand, within CSW01_01715at 348.766 kb on - strand, within CSW01_01715at 348.804 kb on - strand, within CSW01_01715at 348.870 kb on + strand, within CSW01_01715at 348.870 kb on + strand, within CSW01_01715at 348.870 kb on + strand, within CSW01_01715at 348.878 kb on - strand, within CSW01_01715at 348.878 kb on - strand, within CSW01_01715at 348.897 kb on - strand, within CSW01_01715at 348.969 kb on - strandat 349.071 kb on + strandat 349.139 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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347,479 + -0.2
347,557 + +1.0
347,585 - -0.3
347,626 + CSW01_01710 0.13 +2.3
347,669 + CSW01_01710 0.22 -0.2
347,781 + CSW01_01710 0.45 -0.2
347,789 - CSW01_01710 0.46 +0.7
347,878 - CSW01_01710 0.64 +0.3
347,888 + CSW01_01710 0.66 +0.8
347,888 + CSW01_01710 0.66 -0.4
348,001 + CSW01_01710 0.89 +0.5
348,076 - -0.6
348,274 - -0.0
348,285 + CSW01_01715 0.11 +0.6
348,320 + CSW01_01715 0.15 +0.2
348,325 + CSW01_01715 0.16 -1.1
348,375 + CSW01_01715 0.22 -0.4
348,382 + CSW01_01715 0.23 -0.3
348,390 - CSW01_01715 0.24 +0.1
348,582 - CSW01_01715 0.47 -2.4
348,595 + CSW01_01715 0.49 -0.6
348,595 + CSW01_01715 0.49 -1.9
348,595 + CSW01_01715 0.49 +0.0
348,631 - CSW01_01715 0.53 -1.2
348,688 + CSW01_01715 0.60 +1.2
348,688 + CSW01_01715 0.60 +0.0
348,688 + CSW01_01715 0.60 +0.4
348,688 + CSW01_01715 0.60 +0.3
348,688 + CSW01_01715 0.60 -0.4
348,688 + CSW01_01715 0.60 +0.7
348,688 + CSW01_01715 0.60 +1.2
348,688 + CSW01_01715 0.60 +0.7
348,688 + CSW01_01715 0.60 -2.2
348,696 - CSW01_01715 0.61 +0.2
348,696 - CSW01_01715 0.61 -2.1
348,696 - CSW01_01715 0.61 +0.4
348,696 - CSW01_01715 0.61 -3.0
348,696 - CSW01_01715 0.61 +0.8
348,696 - CSW01_01715 0.61 -1.3
348,696 - CSW01_01715 0.61 -0.6
348,696 - CSW01_01715 0.61 +0.5
348,696 - CSW01_01715 0.61 +0.3
348,727 - CSW01_01715 0.65 -1.7
348,731 + CSW01_01715 0.66 -0.0
348,731 + CSW01_01715 0.66 +0.5
348,733 + CSW01_01715 0.66 +0.3
348,739 - CSW01_01715 0.67 -0.7
348,739 - CSW01_01715 0.67 -0.7
348,739 - CSW01_01715 0.67 -0.9
348,766 - CSW01_01715 0.70 -0.8
348,804 - CSW01_01715 0.75 -0.2
348,870 + CSW01_01715 0.83 -1.5
348,870 + CSW01_01715 0.83 -0.2
348,870 + CSW01_01715 0.83 +1.1
348,878 - CSW01_01715 0.84 -1.7
348,878 - CSW01_01715 0.84 -0.1
348,897 - CSW01_01715 0.86 +0.4
348,969 - -0.1
349,071 + +0.8
349,139 - -0.8

Or see this region's nucleotide sequence