Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01130

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01125 and CSW01_01130 are separated by 10 nucleotidesCSW01_01130 and CSW01_01135 overlap by 4 nucleotidesCSW01_01135 and CSW01_01140 overlap by 45 nucleotidesCSW01_01140 and CSW01_01145 are separated by 65 nucleotides CSW01_01125: CSW01_01125 - lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase, at 219,398 to 220,375 _01125 CSW01_01130: CSW01_01130 - lipid A biosynthesis lauroyl acyltransferase, at 220,386 to 221,342 _01130 CSW01_01135: CSW01_01135 - nucleoid occlusion factor SlmA, at 221,339 to 221,929 _01135 CSW01_01140: CSW01_01140 - lipid A biosynthesis lauroyl acyltransferase, at 221,885 to 222,022 _01140 CSW01_01145: CSW01_01145 - bifunctional phosphopantothenoylcysteine decarboxylase CoaC/phosphopantothenate--cysteine ligase CoaB, at 222,088 to 223,287 _01145 Position (kb) 220 221 222Strain fitness (log2 ratio) -2 -1 0 1 2 3at 219.453 kb on + strandat 219.478 kb on - strandat 219.495 kb on + strandat 219.503 kb on - strand, within CSW01_01125at 219.503 kb on - strand, within CSW01_01125at 219.503 kb on - strand, within CSW01_01125at 219.503 kb on - strand, within CSW01_01125at 219.547 kb on - strand, within CSW01_01125at 219.571 kb on - strand, within CSW01_01125at 219.589 kb on + strand, within CSW01_01125at 219.597 kb on - strand, within CSW01_01125at 219.631 kb on - strand, within CSW01_01125at 219.650 kb on - strand, within CSW01_01125at 219.650 kb on - strand, within CSW01_01125at 219.653 kb on - strand, within CSW01_01125at 219.665 kb on + strand, within CSW01_01125at 219.679 kb on - strand, within CSW01_01125at 219.727 kb on - strand, within CSW01_01125at 219.753 kb on - strand, within CSW01_01125at 219.797 kb on - strand, within CSW01_01125at 219.875 kb on - strand, within CSW01_01125at 219.906 kb on - strand, within CSW01_01125at 219.942 kb on + strand, within CSW01_01125at 219.942 kb on + strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.950 kb on - strand, within CSW01_01125at 219.958 kb on - strand, within CSW01_01125at 219.983 kb on + strand, within CSW01_01125at 220.050 kb on + strand, within CSW01_01125at 220.052 kb on + strand, within CSW01_01125at 220.065 kb on + strand, within CSW01_01125at 220.082 kb on - strand, within CSW01_01125at 220.119 kb on - strand, within CSW01_01125at 220.158 kb on + strand, within CSW01_01125at 220.211 kb on + strand, within CSW01_01125at 220.219 kb on - strand, within CSW01_01125at 220.256 kb on + strand, within CSW01_01125at 220.264 kb on - strand, within CSW01_01125at 220.264 kb on - strand, within CSW01_01125at 220.264 kb on - strand, within CSW01_01125at 220.417 kb on - strandat 221.332 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.340 kb on + strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.348 kb on - strandat 221.360 kb on - strandat 221.432 kb on + strand, within CSW01_01135at 221.432 kb on + strand, within CSW01_01135at 221.432 kb on + strand, within CSW01_01135at 221.438 kb on + strand, within CSW01_01135at 221.441 kb on - strand, within CSW01_01135at 221.441 kb on - strand, within CSW01_01135at 221.450 kb on - strand, within CSW01_01135at 221.494 kb on - strand, within CSW01_01135at 221.509 kb on - strand, within CSW01_01135at 221.518 kb on + strand, within CSW01_01135at 221.543 kb on - strand, within CSW01_01135at 221.543 kb on - strand, within CSW01_01135at 221.543 kb on - strand, within CSW01_01135at 221.591 kb on + strand, within CSW01_01135at 221.591 kb on + strand, within CSW01_01135at 221.591 kb on + strand, within CSW01_01135at 221.591 kb on + strand, within CSW01_01135at 221.591 kb on + strand, within CSW01_01135at 221.599 kb on - strand, within CSW01_01135at 221.616 kb on + strand, within CSW01_01135at 221.646 kb on - strand, within CSW01_01135at 221.799 kb on + strand, within CSW01_01135at 221.821 kb on - strand, within CSW01_01135at 221.821 kb on - strand, within CSW01_01135at 221.845 kb on + strand, within CSW01_01135at 221.890 kb on + strandat 221.982 kb on + strand, within CSW01_01140at 222.002 kb on + strand, within CSW01_01140at 222.017 kb on + strandat 222.017 kb on + strandat 222.017 kb on - strandat 222.027 kb on + strandat 222.027 kb on + strandat 222.035 kb on - strandat 222.035 kb on - strandat 222.035 kb on - strandat 222.035 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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219,453 + +0.7
219,478 - -0.7
219,495 + +0.3
219,503 - CSW01_01125 0.11 +0.5
219,503 - CSW01_01125 0.11 +3.4
219,503 - CSW01_01125 0.11 +1.2
219,503 - CSW01_01125 0.11 +0.3
219,547 - CSW01_01125 0.15 +0.6
219,571 - CSW01_01125 0.18 -0.1
219,589 + CSW01_01125 0.20 +2.0
219,597 - CSW01_01125 0.20 +0.6
219,631 - CSW01_01125 0.24 +2.5
219,650 - CSW01_01125 0.26 +3.1
219,650 - CSW01_01125 0.26 +2.3
219,653 - CSW01_01125 0.26 +0.8
219,665 + CSW01_01125 0.27 +0.9
219,679 - CSW01_01125 0.29 +1.0
219,727 - CSW01_01125 0.34 +1.0
219,753 - CSW01_01125 0.36 +3.6
219,797 - CSW01_01125 0.41 +0.1
219,875 - CSW01_01125 0.49 +0.2
219,906 - CSW01_01125 0.52 +0.8
219,942 + CSW01_01125 0.56 +0.2
219,942 + CSW01_01125 0.56 +2.1
219,950 - CSW01_01125 0.56 +1.2
219,950 - CSW01_01125 0.56 +1.0
219,950 - CSW01_01125 0.56 +0.7
219,950 - CSW01_01125 0.56 +1.0
219,950 - CSW01_01125 0.56 -0.5
219,958 - CSW01_01125 0.57 +1.8
219,983 + CSW01_01125 0.60 -0.0
220,050 + CSW01_01125 0.67 -0.1
220,052 + CSW01_01125 0.67 +2.4
220,065 + CSW01_01125 0.68 +0.4
220,082 - CSW01_01125 0.70 -2.4
220,119 - CSW01_01125 0.74 -0.6
220,158 + CSW01_01125 0.78 +0.4
220,211 + CSW01_01125 0.83 +1.4
220,219 - CSW01_01125 0.84 +1.7
220,256 + CSW01_01125 0.88 -2.4
220,264 - CSW01_01125 0.89 +0.2
220,264 - CSW01_01125 0.89 -1.6
220,264 - CSW01_01125 0.89 -0.0
220,417 - -0.2
221,332 + +1.2
221,340 + +1.8
221,340 + +1.0
221,340 + +0.7
221,340 + +0.7
221,340 + +1.0
221,340 + +0.4
221,340 + -0.3
221,340 + +1.2
221,340 + +1.2
221,348 - +0.7
221,348 - -0.4
221,348 - +0.4
221,348 - +0.3
221,348 - +0.3
221,348 - -0.8
221,348 - -0.4
221,348 - +0.4
221,348 - -0.2
221,348 - +0.2
221,348 - +0.1
221,348 - +0.1
221,360 - +0.4
221,432 + CSW01_01135 0.16 +2.3
221,432 + CSW01_01135 0.16 -1.9
221,432 + CSW01_01135 0.16 +0.4
221,438 + CSW01_01135 0.17 +0.8
221,441 - CSW01_01135 0.17 +0.5
221,441 - CSW01_01135 0.17 +1.2
221,450 - CSW01_01135 0.19 +0.6
221,494 - CSW01_01135 0.26 +0.3
221,509 - CSW01_01135 0.29 +0.4
221,518 + CSW01_01135 0.30 -0.3
221,543 - CSW01_01135 0.35 -0.5
221,543 - CSW01_01135 0.35 +0.4
221,543 - CSW01_01135 0.35 -0.6
221,591 + CSW01_01135 0.43 -0.3
221,591 + CSW01_01135 0.43 +0.4
221,591 + CSW01_01135 0.43 +0.2
221,591 + CSW01_01135 0.43 +0.4
221,591 + CSW01_01135 0.43 +0.4
221,599 - CSW01_01135 0.44 +0.6
221,616 + CSW01_01135 0.47 +1.4
221,646 - CSW01_01135 0.52 +0.2
221,799 + CSW01_01135 0.78 -2.6
221,821 - CSW01_01135 0.82 +0.8
221,821 - CSW01_01135 0.82 +0.1
221,845 + CSW01_01135 0.86 -0.6
221,890 + +0.3
221,982 + CSW01_01140 0.70 -0.3
222,002 + CSW01_01140 0.85 +0.3
222,017 + -0.4
222,017 + -0.4
222,017 - +0.3
222,027 + +1.1
222,027 + +0.8
222,035 - +0.3
222,035 - +0.1
222,035 - +0.0
222,035 - -0.3

Or see this region's nucleotide sequence