Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01105

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01100 and CSW01_01105 are separated by 106 nucleotidesCSW01_01105 and CSW01_01110 are separated by 65 nucleotides CSW01_01100: CSW01_01100 - PTS N-acetylmuramic acid EIIBC component, at 214,453 to 215,898 _01100 CSW01_01105: CSW01_01105 - hypothetical protein, at 216,005 to 216,493 _01105 CSW01_01110: CSW01_01110 - YicC family protein, at 216,559 to 217,425 _01110 Position (kb) 216 217Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 215.041 kb on - strand, within CSW01_01100at 215.046 kb on - strand, within CSW01_01100at 215.078 kb on + strand, within CSW01_01100at 215.086 kb on - strand, within CSW01_01100at 215.116 kb on - strand, within CSW01_01100at 215.138 kb on + strand, within CSW01_01100at 215.224 kb on - strand, within CSW01_01100at 215.255 kb on - strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.409 kb on + strand, within CSW01_01100at 215.436 kb on + strand, within CSW01_01100at 215.465 kb on + strand, within CSW01_01100at 215.465 kb on + strand, within CSW01_01100at 215.472 kb on - strand, within CSW01_01100at 215.473 kb on - strand, within CSW01_01100at 215.473 kb on - strand, within CSW01_01100at 215.520 kb on - strand, within CSW01_01100at 215.619 kb on + strand, within CSW01_01100at 215.740 kb on + strand, within CSW01_01100at 215.740 kb on + strand, within CSW01_01100at 215.758 kb on - strandat 215.778 kb on - strandat 215.837 kb on + strandat 215.845 kb on - strandat 215.851 kb on - strandat 215.860 kb on + strandat 215.892 kb on + strandat 215.907 kb on + strandat 215.920 kb on - strandat 215.936 kb on - strandat 215.954 kb on + strandat 216.017 kb on + strandat 216.104 kb on - strand, within CSW01_01105at 216.124 kb on - strand, within CSW01_01105at 216.203 kb on - strand, within CSW01_01105at 216.203 kb on - strand, within CSW01_01105at 216.213 kb on + strand, within CSW01_01105at 216.283 kb on + strand, within CSW01_01105at 216.291 kb on - strand, within CSW01_01105at 216.320 kb on + strand, within CSW01_01105at 216.362 kb on + strand, within CSW01_01105at 216.421 kb on + strand, within CSW01_01105at 216.421 kb on + strand, within CSW01_01105at 216.429 kb on - strand, within CSW01_01105at 216.429 kb on - strand, within CSW01_01105at 216.445 kb on + strandat 216.445 kb on + strandat 216.513 kb on + strandat 216.549 kb on + strandat 216.550 kb on + strandat 216.594 kb on - strandat 216.636 kb on - strandat 216.671 kb on + strand, within CSW01_01110at 216.679 kb on - strand, within CSW01_01110at 216.681 kb on - strand, within CSW01_01110at 216.766 kb on + strand, within CSW01_01110at 216.774 kb on - strand, within CSW01_01110at 216.813 kb on - strand, within CSW01_01110at 216.819 kb on - strand, within CSW01_01110at 216.845 kb on - strand, within CSW01_01110at 216.962 kb on + strand, within CSW01_01110at 216.977 kb on + strand, within CSW01_01110at 216.977 kb on + strand, within CSW01_01110at 217.025 kb on + strand, within CSW01_01110at 217.030 kb on + strand, within CSW01_01110at 217.038 kb on - strand, within CSW01_01110at 217.038 kb on - strand, within CSW01_01110at 217.059 kb on - strand, within CSW01_01110at 217.060 kb on - strand, within CSW01_01110at 217.114 kb on - strand, within CSW01_01110at 217.120 kb on + strand, within CSW01_01110at 217.125 kb on - strand, within CSW01_01110at 217.129 kb on + strand, within CSW01_01110at 217.276 kb on + strand, within CSW01_01110at 217.287 kb on + strand, within CSW01_01110at 217.295 kb on + strand, within CSW01_01110at 217.295 kb on - strand, within CSW01_01110at 217.295 kb on - strand, within CSW01_01110at 217.303 kb on - strand, within CSW01_01110at 217.305 kb on + strand, within CSW01_01110at 217.313 kb on - strand, within CSW01_01110at 217.367 kb on + strandat 217.375 kb on - strandat 217.380 kb on - strandat 217.382 kb on + strandat 217.390 kb on - strandat 217.409 kb on + strandat 217.417 kb on - strandat 217.457 kb on - strandat 217.489 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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215,041 - CSW01_01100 0.41 -0.7
215,046 - CSW01_01100 0.41 +0.0
215,078 + CSW01_01100 0.43 -0.5
215,086 - CSW01_01100 0.44 -0.4
215,116 - CSW01_01100 0.46 -0.5
215,138 + CSW01_01100 0.47 -0.3
215,224 - CSW01_01100 0.53 -0.2
215,255 - CSW01_01100 0.55 +0.9
215,319 + CSW01_01100 0.60 -0.1
215,319 + CSW01_01100 0.60 +0.6
215,319 + CSW01_01100 0.60 +0.4
215,319 + CSW01_01100 0.60 -0.7
215,319 + CSW01_01100 0.60 +1.3
215,319 + CSW01_01100 0.60 +0.0
215,319 + CSW01_01100 0.60 +0.4
215,319 + CSW01_01100 0.60 -0.2
215,327 - CSW01_01100 0.60 -4.0
215,327 - CSW01_01100 0.60 -0.4
215,327 - CSW01_01100 0.60 -0.0
215,327 - CSW01_01100 0.60 +0.5
215,327 - CSW01_01100 0.60 +0.6
215,327 - CSW01_01100 0.60 -0.8
215,327 - CSW01_01100 0.60 +1.0
215,327 - CSW01_01100 0.60 -0.2
215,327 - CSW01_01100 0.60 -0.2
215,409 + CSW01_01100 0.66 +0.3
215,436 + CSW01_01100 0.68 +0.0
215,465 + CSW01_01100 0.70 +0.3
215,465 + CSW01_01100 0.70 +0.6
215,472 - CSW01_01100 0.70 -0.1
215,473 - CSW01_01100 0.71 -2.1
215,473 - CSW01_01100 0.71 -0.0
215,520 - CSW01_01100 0.74 +0.5
215,619 + CSW01_01100 0.81 -0.4
215,740 + CSW01_01100 0.89 -0.1
215,740 + CSW01_01100 0.89 +1.3
215,758 - +1.3
215,778 - +0.1
215,837 + -1.3
215,845 - +0.2
215,851 - +1.3
215,860 + -0.7
215,892 + +0.1
215,907 + +0.4
215,920 - -0.3
215,936 - +0.8
215,954 + +0.9
216,017 + -0.3
216,104 - CSW01_01105 0.20 -1.8
216,124 - CSW01_01105 0.24 +0.0
216,203 - CSW01_01105 0.40 +0.8
216,203 - CSW01_01105 0.40 +0.3
216,213 + CSW01_01105 0.43 +1.5
216,283 + CSW01_01105 0.57 -0.4
216,291 - CSW01_01105 0.58 -0.3
216,320 + CSW01_01105 0.64 -0.3
216,362 + CSW01_01105 0.73 +0.1
216,421 + CSW01_01105 0.85 -0.4
216,421 + CSW01_01105 0.85 +0.2
216,429 - CSW01_01105 0.87 -0.1
216,429 - CSW01_01105 0.87 +1.3
216,445 + +0.2
216,445 + -0.3
216,513 + -0.1
216,549 + +0.0
216,550 + -0.1
216,594 - +0.1
216,636 - +0.0
216,671 + CSW01_01110 0.13 -1.0
216,679 - CSW01_01110 0.14 -0.2
216,681 - CSW01_01110 0.14 +0.2
216,766 + CSW01_01110 0.24 -0.1
216,774 - CSW01_01110 0.25 -0.9
216,813 - CSW01_01110 0.29 +0.2
216,819 - CSW01_01110 0.30 -0.9
216,845 - CSW01_01110 0.33 +0.3
216,962 + CSW01_01110 0.46 +0.2
216,977 + CSW01_01110 0.48 -1.4
216,977 + CSW01_01110 0.48 +0.4
217,025 + CSW01_01110 0.54 +0.2
217,030 + CSW01_01110 0.54 +0.2
217,038 - CSW01_01110 0.55 +0.8
217,038 - CSW01_01110 0.55 -0.0
217,059 - CSW01_01110 0.58 -0.5
217,060 - CSW01_01110 0.58 +0.4
217,114 - CSW01_01110 0.64 -0.1
217,120 + CSW01_01110 0.65 +1.4
217,125 - CSW01_01110 0.65 +3.3
217,129 + CSW01_01110 0.66 -0.9
217,276 + CSW01_01110 0.83 -0.6
217,287 + CSW01_01110 0.84 -0.6
217,295 + CSW01_01110 0.85 -1.0
217,295 - CSW01_01110 0.85 +0.3
217,295 - CSW01_01110 0.85 +0.2
217,303 - CSW01_01110 0.86 +0.3
217,305 + CSW01_01110 0.86 -0.8
217,313 - CSW01_01110 0.87 +0.4
217,367 + -1.3
217,375 - +0.6
217,380 - -0.7
217,382 + +0.5
217,390 - -0.7
217,409 + +1.4
217,417 - -1.1
217,457 - +0.4
217,489 + +1.3

Or see this region's nucleotide sequence