Experiment: LB_Anaerobic_60MIN_ZN4B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00840 and CSW01_00845 are separated by 126 nucleotides CSW01_00845 and CSW01_00850 are separated by 115 nucleotides CSW01_00850 and CSW01_00855 are separated by 11 nucleotides
CSW01_00840: CSW01_00840 - ketol-acid reductoisomerase, at 157,442 to 158,926
_00840
CSW01_00845: CSW01_00845 - cytoplasmic protein, at 159,053 to 159,304
_00845
CSW01_00850: CSW01_00850 - multidrug resistance protein, at 159,420 to 162,530
_00850
CSW01_00855: CSW01_00855 - MexH family multidrug efflux RND transporter periplasmic adaptor subunit, at 162,542 to 163,648
_00855
Position (kb) 159
160
161
162
163 Strain fitness (log2 ratio) -2
-1
0
1
2 at 158.587 kb on - strand, within CSW01_00840 at 158.693 kb on + strand, within CSW01_00840 at 158.729 kb on + strand, within CSW01_00840 at 158.745 kb on + strand, within CSW01_00840 at 158.791 kb on - strand at 158.871 kb on + strand at 158.871 kb on + strand at 158.899 kb on + strand at 158.913 kb on - strand at 158.954 kb on + strand at 158.954 kb on + strand at 158.954 kb on + strand at 158.983 kb on + strand at 158.985 kb on - strand at 159.025 kb on - strand at 159.025 kb on - strand at 159.054 kb on + strand at 159.057 kb on - strand at 159.417 kb on + strand at 159.439 kb on + strand at 159.446 kb on - strand at 159.475 kb on + strand at 159.606 kb on + strand at 159.619 kb on - strand at 159.639 kb on - strand at 159.648 kb on - strand at 159.675 kb on + strand at 159.675 kb on + strand at 159.698 kb on + strand at 159.698 kb on + strand at 159.706 kb on - strand at 159.718 kb on + strand at 159.732 kb on + strand, within CSW01_00850 at 159.850 kb on + strand, within CSW01_00850 at 159.850 kb on + strand, within CSW01_00850 at 159.850 kb on + strand, within CSW01_00850 at 159.850 kb on + strand, within CSW01_00850 at 159.850 kb on + strand, within CSW01_00850 at 159.850 kb on + strand, within CSW01_00850 at 159.858 kb on - strand, within CSW01_00850 at 159.858 kb on - strand, within CSW01_00850 at 159.858 kb on - strand, within CSW01_00850 at 159.858 kb on - strand, within CSW01_00850 at 159.858 kb on - strand, within CSW01_00850 at 159.887 kb on + strand, within CSW01_00850 at 160.024 kb on + strand, within CSW01_00850 at 160.046 kb on - strand, within CSW01_00850 at 160.046 kb on - strand, within CSW01_00850 at 160.053 kb on - strand, within CSW01_00850 at 160.095 kb on + strand, within CSW01_00850 at 160.095 kb on + strand, within CSW01_00850 at 160.095 kb on + strand, within CSW01_00850 at 160.097 kb on + strand, within CSW01_00850 at 160.103 kb on - strand, within CSW01_00850 at 160.103 kb on - strand, within CSW01_00850 at 160.103 kb on - strand, within CSW01_00850 at 160.146 kb on - strand, within CSW01_00850 at 160.146 kb on - strand, within CSW01_00850 at 160.156 kb on - strand, within CSW01_00850 at 160.161 kb on - strand, within CSW01_00850 at 160.216 kb on + strand, within CSW01_00850 at 160.298 kb on + strand, within CSW01_00850 at 160.333 kb on + strand, within CSW01_00850 at 160.333 kb on + strand, within CSW01_00850 at 160.396 kb on + strand, within CSW01_00850 at 160.401 kb on + strand, within CSW01_00850 at 160.402 kb on + strand, within CSW01_00850 at 160.402 kb on + strand, within CSW01_00850 at 160.507 kb on - strand, within CSW01_00850 at 160.569 kb on + strand, within CSW01_00850 at 160.571 kb on - strand, within CSW01_00850 at 160.577 kb on - strand, within CSW01_00850 at 160.601 kb on + strand, within CSW01_00850 at 160.665 kb on + strand, within CSW01_00850 at 160.754 kb on - strand, within CSW01_00850 at 160.754 kb on - strand, within CSW01_00850 at 160.833 kb on + strand, within CSW01_00850 at 160.838 kb on + strand, within CSW01_00850 at 160.838 kb on + strand, within CSW01_00850 at 160.838 kb on + strand, within CSW01_00850 at 160.838 kb on + strand, within CSW01_00850 at 160.838 kb on + strand, within CSW01_00850 at 160.838 kb on + strand, within CSW01_00850 at 160.838 kb on + strand, within CSW01_00850 at 160.838 kb on + strand, within CSW01_00850 at 160.838 kb on + strand, within CSW01_00850 at 160.840 kb on + strand, within CSW01_00850 at 160.841 kb on - strand, within CSW01_00850 at 160.846 kb on - strand, within CSW01_00850 at 160.846 kb on - strand, within CSW01_00850 at 160.851 kb on - strand, within CSW01_00850 at 160.952 kb on + strand, within CSW01_00850 at 160.952 kb on - strand, within CSW01_00850 at 161.022 kb on - strand, within CSW01_00850 at 161.059 kb on + strand, within CSW01_00850 at 161.069 kb on + strand, within CSW01_00850 at 161.069 kb on + strand, within CSW01_00850 at 161.077 kb on - strand, within CSW01_00850 at 161.077 kb on - strand, within CSW01_00850 at 161.077 kb on - strand, within CSW01_00850 at 161.125 kb on + strand, within CSW01_00850 at 161.186 kb on - strand, within CSW01_00850 at 161.275 kb on + strand, within CSW01_00850 at 161.283 kb on - strand, within CSW01_00850 at 161.318 kb on - strand, within CSW01_00850 at 161.336 kb on + strand, within CSW01_00850 at 161.336 kb on + strand, within CSW01_00850 at 161.336 kb on + strand, within CSW01_00850 at 161.344 kb on - strand, within CSW01_00850 at 161.344 kb on - strand, within CSW01_00850 at 161.344 kb on - strand, within CSW01_00850 at 161.344 kb on - strand, within CSW01_00850 at 161.344 kb on - strand, within CSW01_00850 at 161.344 kb on - strand, within CSW01_00850 at 161.464 kb on - strand, within CSW01_00850 at 161.464 kb on - strand, within CSW01_00850 at 161.473 kb on + strand, within CSW01_00850 at 161.478 kb on + strand, within CSW01_00850 at 161.481 kb on - strand, within CSW01_00850 at 161.481 kb on - strand, within CSW01_00850 at 161.481 kb on - strand, within CSW01_00850 at 161.481 kb on - strand, within CSW01_00850 at 161.481 kb on - strand, within CSW01_00850 at 161.483 kb on - strand, within CSW01_00850 at 161.524 kb on + strand, within CSW01_00850 at 161.531 kb on - strand, within CSW01_00850 at 161.561 kb on + strand, within CSW01_00850 at 161.604 kb on + strand, within CSW01_00850 at 161.657 kb on + strand, within CSW01_00850 at 161.713 kb on - strand, within CSW01_00850 at 161.732 kb on - strand, within CSW01_00850 at 161.772 kb on + strand, within CSW01_00850 at 161.799 kb on - strand, within CSW01_00850 at 161.806 kb on - strand, within CSW01_00850 at 161.824 kb on + strand, within CSW01_00850 at 161.824 kb on + strand, within CSW01_00850 at 161.832 kb on - strand, within CSW01_00850 at 161.884 kb on + strand, within CSW01_00850 at 161.939 kb on + strand, within CSW01_00850 at 161.939 kb on + strand, within CSW01_00850 at 161.963 kb on + strand, within CSW01_00850 at 162.003 kb on - strand, within CSW01_00850 at 162.029 kb on - strand, within CSW01_00850 at 162.029 kb on - strand, within CSW01_00850 at 162.038 kb on + strand, within CSW01_00850 at 162.039 kb on - strand, within CSW01_00850 at 162.039 kb on - strand, within CSW01_00850 at 162.039 kb on - strand, within CSW01_00850 at 162.039 kb on - strand, within CSW01_00850 at 162.039 kb on - strand, within CSW01_00850 at 162.039 kb on - strand, within CSW01_00850 at 162.055 kb on + strand, within CSW01_00850 at 162.094 kb on + strand, within CSW01_00850 at 162.106 kb on + strand, within CSW01_00850 at 162.134 kb on - strand, within CSW01_00850 at 162.158 kb on - strand, within CSW01_00850 at 162.166 kb on + strand, within CSW01_00850 at 162.190 kb on + strand, within CSW01_00850 at 162.190 kb on + strand, within CSW01_00850 at 162.190 kb on + strand, within CSW01_00850 at 162.196 kb on + strand, within CSW01_00850 at 162.204 kb on - strand, within CSW01_00850 at 162.231 kb on - strand at 162.231 kb on - strand at 162.231 kb on - strand at 162.233 kb on - strand at 162.262 kb on - strand at 162.278 kb on - strand at 162.278 kb on - strand at 162.290 kb on - strand at 162.359 kb on + strand at 162.398 kb on + strand at 162.515 kb on + strand at 162.555 kb on - strand at 162.555 kb on - strand at 162.555 kb on - strand at 162.555 kb on - strand at 162.598 kb on + strand at 162.598 kb on + strand at 162.606 kb on + strand at 162.606 kb on + strand at 162.606 kb on - strand at 162.606 kb on - strand at 162.606 kb on - strand at 162.606 kb on - strand at 162.611 kb on + strand at 162.637 kb on + strand at 162.652 kb on + strand at 162.652 kb on + strand at 162.652 kb on + strand at 162.660 kb on - strand, within CSW01_00855 at 162.725 kb on + strand, within CSW01_00855 at 162.733 kb on - strand, within CSW01_00855 at 162.748 kb on + strand, within CSW01_00855 at 162.757 kb on + strand, within CSW01_00855 at 162.765 kb on - strand, within CSW01_00855 at 162.772 kb on + strand, within CSW01_00855 at 162.772 kb on + strand, within CSW01_00855 at 162.773 kb on + strand, within CSW01_00855 at 162.773 kb on - strand, within CSW01_00855 at 162.780 kb on - strand, within CSW01_00855 at 162.780 kb on - strand, within CSW01_00855 at 162.780 kb on - strand, within CSW01_00855 at 162.780 kb on - strand, within CSW01_00855 at 162.780 kb on - strand, within CSW01_00855 at 162.780 kb on - strand, within CSW01_00855 at 162.780 kb on - strand, within CSW01_00855 at 162.780 kb on - strand, within CSW01_00855 at 162.780 kb on - strand, within CSW01_00855 at 162.789 kb on + strand, within CSW01_00855 at 162.797 kb on - strand, within CSW01_00855 at 162.902 kb on - strand, within CSW01_00855 at 162.941 kb on + strand, within CSW01_00855 at 162.949 kb on - strand, within CSW01_00855 at 163.035 kb on + strand, within CSW01_00855 at 163.043 kb on - strand, within CSW01_00855 at 163.058 kb on + strand, within CSW01_00855 at 163.058 kb on + strand, within CSW01_00855 at 163.058 kb on + strand, within CSW01_00855 at 163.058 kb on + strand, within CSW01_00855 at 163.058 kb on + strand, within CSW01_00855 at 163.066 kb on - strand, within CSW01_00855 at 163.079 kb on + strand, within CSW01_00855 at 163.162 kb on + strand, within CSW01_00855 at 163.201 kb on + strand, within CSW01_00855 at 163.206 kb on + strand, within CSW01_00855 at 163.232 kb on + strand, within CSW01_00855 at 163.259 kb on + strand, within CSW01_00855 at 163.267 kb on - strand, within CSW01_00855 at 163.267 kb on - strand, within CSW01_00855 at 163.274 kb on - strand, within CSW01_00855 at 163.274 kb on - strand, within CSW01_00855 at 163.317 kb on - strand, within CSW01_00855 at 163.349 kb on - strand, within CSW01_00855 at 163.355 kb on + strand, within CSW01_00855 at 163.361 kb on + strand, within CSW01_00855 at 163.363 kb on - strand, within CSW01_00855 at 163.363 kb on - strand, within CSW01_00855 at 163.363 kb on - strand, within CSW01_00855 at 163.363 kb on - strand, within CSW01_00855 at 163.422 kb on - strand, within CSW01_00855 at 163.443 kb on + strand, within CSW01_00855 at 163.443 kb on - strand, within CSW01_00855 at 163.456 kb on + strand, within CSW01_00855 at 163.464 kb on - strand, within CSW01_00855 at 163.506 kb on - strand, within CSW01_00855
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B remove 158,587 - CSW01_00840 0.77 +0.1 158,693 + CSW01_00840 0.84 -1.4 158,729 + CSW01_00840 0.87 -0.0 158,745 + CSW01_00840 0.88 +0.4 158,791 - +0.3 158,871 + +0.7 158,871 + +0.4 158,899 + +0.1 158,913 - -0.1 158,954 + +0.1 158,954 + -0.3 158,954 + +0.6 158,983 + +0.3 158,985 - -0.1 159,025 - -0.5 159,025 - -1.0 159,054 + +0.4 159,057 - +0.3 159,417 + +0.6 159,439 + -0.0 159,446 - +0.0 159,475 + +0.4 159,606 + -0.4 159,619 - +0.3 159,639 - -0.5 159,648 - +0.6 159,675 + +0.1 159,675 + -0.5 159,698 + +1.7 159,698 + +0.1 159,706 - +1.3 159,718 + +0.2 159,732 + CSW01_00850 0.10 -1.0 159,850 + CSW01_00850 0.14 -1.3 159,850 + CSW01_00850 0.14 +0.7 159,850 + CSW01_00850 0.14 +0.3 159,850 + CSW01_00850 0.14 -0.2 159,850 + CSW01_00850 0.14 -2.4 159,850 + CSW01_00850 0.14 -0.0 159,858 - CSW01_00850 0.14 +0.0 159,858 - CSW01_00850 0.14 +0.7 159,858 - CSW01_00850 0.14 -0.5 159,858 - CSW01_00850 0.14 -2.6 159,858 - CSW01_00850 0.14 -0.1 159,887 + CSW01_00850 0.15 +1.0 160,024 + CSW01_00850 0.19 +0.3 160,046 - CSW01_00850 0.20 -0.5 160,046 - CSW01_00850 0.20 +0.3 160,053 - CSW01_00850 0.20 -0.3 160,095 + CSW01_00850 0.22 +0.1 160,095 + CSW01_00850 0.22 -0.8 160,095 + CSW01_00850 0.22 +0.5 160,097 + CSW01_00850 0.22 +1.1 160,103 - CSW01_00850 0.22 -1.6 160,103 - CSW01_00850 0.22 +0.5 160,103 - CSW01_00850 0.22 -0.9 160,146 - CSW01_00850 0.23 -1.4 160,146 - CSW01_00850 0.23 +0.1 160,156 - CSW01_00850 0.24 -1.2 160,161 - CSW01_00850 0.24 -0.6 160,216 + CSW01_00850 0.26 +1.4 160,298 + CSW01_00850 0.28 -0.2 160,333 + CSW01_00850 0.29 +0.9 160,333 + CSW01_00850 0.29 +0.0 160,396 + CSW01_00850 0.31 +1.7 160,401 + CSW01_00850 0.32 +0.3 160,402 + CSW01_00850 0.32 +0.2 160,402 + CSW01_00850 0.32 +0.9 160,507 - CSW01_00850 0.35 -0.2 160,569 + CSW01_00850 0.37 +1.0 160,571 - CSW01_00850 0.37 +0.4 160,577 - CSW01_00850 0.37 +1.0 160,601 + CSW01_00850 0.38 +0.2 160,665 + CSW01_00850 0.40 -0.2 160,754 - CSW01_00850 0.43 +0.2 160,754 - CSW01_00850 0.43 -1.9 160,833 + CSW01_00850 0.45 -0.0 160,838 + CSW01_00850 0.46 +1.0 160,838 + CSW01_00850 0.46 +0.0 160,838 + CSW01_00850 0.46 -1.2 160,838 + CSW01_00850 0.46 -0.1 160,838 + CSW01_00850 0.46 +0.5 160,838 + CSW01_00850 0.46 -0.7 160,838 + CSW01_00850 0.46 -1.7 160,838 + CSW01_00850 0.46 +0.2 160,838 + CSW01_00850 0.46 -0.1 160,840 + CSW01_00850 0.46 +1.8 160,841 - CSW01_00850 0.46 -0.1 160,846 - CSW01_00850 0.46 -0.1 160,846 - CSW01_00850 0.46 +2.5 160,851 - CSW01_00850 0.46 -0.7 160,952 + CSW01_00850 0.49 +0.8 160,952 - CSW01_00850 0.49 -0.6 161,022 - CSW01_00850 0.51 -0.3 161,059 + CSW01_00850 0.53 +0.6 161,069 + CSW01_00850 0.53 -0.8 161,069 + CSW01_00850 0.53 +0.9 161,077 - CSW01_00850 0.53 -0.2 161,077 - CSW01_00850 0.53 -0.3 161,077 - CSW01_00850 0.53 -0.1 161,125 + CSW01_00850 0.55 +0.1 161,186 - CSW01_00850 0.57 +0.7 161,275 + CSW01_00850 0.60 -0.5 161,283 - CSW01_00850 0.60 -0.1 161,318 - CSW01_00850 0.61 +0.7 161,336 + CSW01_00850 0.62 -0.4 161,336 + CSW01_00850 0.62 +1.2 161,336 + CSW01_00850 0.62 +0.3 161,344 - CSW01_00850 0.62 -0.3 161,344 - CSW01_00850 0.62 +1.4 161,344 - CSW01_00850 0.62 -0.6 161,344 - CSW01_00850 0.62 +0.6 161,344 - CSW01_00850 0.62 -0.3 161,344 - CSW01_00850 0.62 +0.5 161,464 - CSW01_00850 0.66 +1.0 161,464 - CSW01_00850 0.66 +0.8 161,473 + CSW01_00850 0.66 +1.2 161,478 + CSW01_00850 0.66 -0.1 161,481 - CSW01_00850 0.66 -0.3 161,481 - CSW01_00850 0.66 +0.5 161,481 - CSW01_00850 0.66 -0.2 161,481 - CSW01_00850 0.66 +0.1 161,481 - CSW01_00850 0.66 -0.1 161,483 - CSW01_00850 0.66 -0.1 161,524 + CSW01_00850 0.68 +0.8 161,531 - CSW01_00850 0.68 +0.0 161,561 + CSW01_00850 0.69 +2.2 161,604 + CSW01_00850 0.70 +0.3 161,657 + CSW01_00850 0.72 -0.7 161,713 - CSW01_00850 0.74 -0.9 161,732 - CSW01_00850 0.74 -1.4 161,772 + CSW01_00850 0.76 +0.4 161,799 - CSW01_00850 0.76 +1.3 161,806 - CSW01_00850 0.77 -0.3 161,824 + CSW01_00850 0.77 -1.2 161,824 + CSW01_00850 0.77 +0.7 161,832 - CSW01_00850 0.78 +0.3 161,884 + CSW01_00850 0.79 +1.4 161,939 + CSW01_00850 0.81 +1.5 161,939 + CSW01_00850 0.81 -0.2 161,963 + CSW01_00850 0.82 -0.8 162,003 - CSW01_00850 0.83 +0.4 162,029 - CSW01_00850 0.84 -1.8 162,029 - CSW01_00850 0.84 +1.2 162,038 + CSW01_00850 0.84 +0.7 162,039 - CSW01_00850 0.84 +0.4 162,039 - CSW01_00850 0.84 +0.6 162,039 - CSW01_00850 0.84 +2.2 162,039 - CSW01_00850 0.84 +0.8 162,039 - CSW01_00850 0.84 +0.7 162,039 - CSW01_00850 0.84 -2.2 162,055 + CSW01_00850 0.85 +0.1 162,094 + CSW01_00850 0.86 -0.6 162,106 + CSW01_00850 0.86 -0.9 162,134 - CSW01_00850 0.87 +0.2 162,158 - CSW01_00850 0.88 -0.9 162,166 + CSW01_00850 0.88 +1.0 162,190 + CSW01_00850 0.89 -2.3 162,190 + CSW01_00850 0.89 +0.2 162,190 + CSW01_00850 0.89 +0.5 162,196 + CSW01_00850 0.89 -0.6 162,204 - CSW01_00850 0.89 -0.4 162,231 - -0.3 162,231 - +0.5 162,231 - -0.5 162,233 - -0.9 162,262 - -0.2 162,278 - -0.9 162,278 - -1.5 162,290 - -0.3 162,359 + +0.3 162,398 + +0.1 162,515 + +0.1 162,555 - -0.2 162,555 - +0.2 162,555 - -0.5 162,555 - +1.6 162,598 + +0.2 162,598 + -0.5 162,606 + -0.3 162,606 + +0.7 162,606 - -0.5 162,606 - +1.3 162,606 - -1.1 162,606 - +1.1 162,611 + -0.4 162,637 + -2.6 162,652 + -0.6 162,652 + +0.5 162,652 + -1.2 162,660 - CSW01_00855 0.11 +0.0 162,725 + CSW01_00855 0.17 -1.6 162,733 - CSW01_00855 0.17 -0.7 162,748 + CSW01_00855 0.19 +0.1 162,757 + CSW01_00855 0.19 +0.4 162,765 - CSW01_00855 0.20 +1.4 162,772 + CSW01_00855 0.21 -0.3 162,772 + CSW01_00855 0.21 -0.4 162,773 + CSW01_00855 0.21 -0.2 162,773 - CSW01_00855 0.21 +1.5 162,780 - CSW01_00855 0.21 +0.7 162,780 - CSW01_00855 0.21 +0.0 162,780 - CSW01_00855 0.21 -0.3 162,780 - CSW01_00855 0.21 -2.7 162,780 - CSW01_00855 0.21 -1.8 162,780 - CSW01_00855 0.21 -0.7 162,780 - CSW01_00855 0.21 -0.1 162,780 - CSW01_00855 0.21 -0.1 162,780 - CSW01_00855 0.21 -0.2 162,789 + CSW01_00855 0.22 -0.4 162,797 - CSW01_00855 0.23 +0.4 162,902 - CSW01_00855 0.33 +1.4 162,941 + CSW01_00855 0.36 -0.1 162,949 - CSW01_00855 0.37 +0.9 163,035 + CSW01_00855 0.45 +0.5 163,043 - CSW01_00855 0.45 -0.3 163,058 + CSW01_00855 0.47 -0.1 163,058 + CSW01_00855 0.47 -0.2 163,058 + CSW01_00855 0.47 -1.6 163,058 + CSW01_00855 0.47 -0.4 163,058 + CSW01_00855 0.47 -0.7 163,066 - CSW01_00855 0.47 +1.1 163,079 + CSW01_00855 0.49 -1.3 163,162 + CSW01_00855 0.56 -0.7 163,201 + CSW01_00855 0.60 -0.7 163,206 + CSW01_00855 0.60 -0.5 163,232 + CSW01_00855 0.62 +0.8 163,259 + CSW01_00855 0.65 -0.2 163,267 - CSW01_00855 0.65 -0.7 163,267 - CSW01_00855 0.65 -1.2 163,274 - CSW01_00855 0.66 -0.6 163,274 - CSW01_00855 0.66 -2.2 163,317 - CSW01_00855 0.70 +2.0 163,349 - CSW01_00855 0.73 -0.1 163,355 + CSW01_00855 0.73 +0.5 163,361 + CSW01_00855 0.74 -0.6 163,363 - CSW01_00855 0.74 -2.1 163,363 - CSW01_00855 0.74 +0.9 163,363 - CSW01_00855 0.74 +0.0 163,363 - CSW01_00855 0.74 +0.5 163,422 - CSW01_00855 0.79 -0.7 163,443 + CSW01_00855 0.81 +0.2 163,443 - CSW01_00855 0.81 +0.6 163,456 + CSW01_00855 0.83 -0.5 163,464 - CSW01_00855 0.83 -1.0 163,506 - CSW01_00855 0.87 +0.5
Or see this region's nucleotide sequence