Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00780

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00765 and CSW01_00770 are separated by 12 nucleotidesCSW01_00770 and CSW01_00775 are separated by 55 nucleotidesCSW01_00775 and CSW01_00780 are separated by 39 nucleotidesCSW01_00780 and CSW01_00785 are separated by 36 nucleotides CSW01_00765: CSW01_00765 - Si-specific NAD(P)(+) transhydrogenase, at 141,067 to 142,467 _00765 CSW01_00770: CSW01_00770 - hypothetical protein, at 142,480 to 142,719 _00770 CSW01_00775: CSW01_00775 - HTH-type transcriptional repressor FabR, at 142,775 to 143,416 _00775 CSW01_00780: CSW01_00780 - hypothetical protein, at 143,456 to 143,827 _00780 CSW01_00785: CSW01_00785 - tRNA (uridine(54)-C5)-methyltransferase TrmA, at 143,864 to 144,973 _00785 Position (kb) 143 144Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 142.547 kb on + strand, within CSW01_00770at 142.554 kb on + strand, within CSW01_00770at 142.554 kb on + strand, within CSW01_00770at 142.554 kb on + strand, within CSW01_00770at 142.554 kb on + strand, within CSW01_00770at 142.554 kb on + strand, within CSW01_00770at 142.554 kb on + strand, within CSW01_00770at 142.554 kb on + strand, within CSW01_00770at 142.556 kb on + strand, within CSW01_00770at 142.556 kb on - strand, within CSW01_00770at 142.562 kb on - strand, within CSW01_00770at 142.572 kb on - strand, within CSW01_00770at 142.585 kb on - strand, within CSW01_00770at 142.682 kb on + strand, within CSW01_00770at 142.682 kb on + strand, within CSW01_00770at 142.682 kb on + strand, within CSW01_00770at 142.682 kb on + strand, within CSW01_00770at 142.682 kb on + strand, within CSW01_00770at 142.697 kb on + strandat 142.700 kb on + strandat 142.763 kb on + strandat 142.766 kb on - strandat 142.766 kb on - strandat 142.766 kb on - strandat 142.766 kb on - strandat 142.847 kb on - strand, within CSW01_00775at 142.852 kb on - strand, within CSW01_00775at 142.857 kb on - strand, within CSW01_00775at 142.908 kb on + strand, within CSW01_00775at 142.957 kb on + strand, within CSW01_00775at 142.965 kb on - strand, within CSW01_00775at 142.980 kb on - strand, within CSW01_00775at 143.015 kb on + strand, within CSW01_00775at 143.015 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.064 kb on + strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.072 kb on - strand, within CSW01_00775at 143.088 kb on + strand, within CSW01_00775at 143.088 kb on + strand, within CSW01_00775at 143.096 kb on - strand, within CSW01_00775at 143.096 kb on - strand, within CSW01_00775at 143.150 kb on + strand, within CSW01_00775at 143.165 kb on + strand, within CSW01_00775at 143.173 kb on - strand, within CSW01_00775at 143.190 kb on + strand, within CSW01_00775at 143.235 kb on - strand, within CSW01_00775at 143.255 kb on + strand, within CSW01_00775at 143.331 kb on - strand, within CSW01_00775at 143.350 kb on + strand, within CSW01_00775at 143.350 kb on + strand, within CSW01_00775at 143.350 kb on + strand, within CSW01_00775at 143.358 kb on - strandat 143.358 kb on - strandat 143.358 kb on - strandat 143.358 kb on - strandat 143.358 kb on - strandat 143.368 kb on - strandat 143.370 kb on + strandat 143.371 kb on - strandat 143.395 kb on + strandat 143.403 kb on - strandat 143.417 kb on + strandat 143.494 kb on + strand, within CSW01_00780at 143.502 kb on - strand, within CSW01_00780at 143.562 kb on - strand, within CSW01_00780at 143.573 kb on - strand, within CSW01_00780at 143.597 kb on + strand, within CSW01_00780at 143.696 kb on + strand, within CSW01_00780at 143.711 kb on + strand, within CSW01_00780at 143.723 kb on + strand, within CSW01_00780at 143.768 kb on + strand, within CSW01_00780at 143.929 kb on + strandat 143.937 kb on - strandat 143.937 kb on - strandat 144.010 kb on - strand, within CSW01_00785at 144.016 kb on + strand, within CSW01_00785at 144.023 kb on + strand, within CSW01_00785at 144.050 kb on + strand, within CSW01_00785at 144.106 kb on - strand, within CSW01_00785at 144.122 kb on + strand, within CSW01_00785at 144.122 kb on - strand, within CSW01_00785at 144.206 kb on - strand, within CSW01_00785at 144.206 kb on - strand, within CSW01_00785at 144.323 kb on - strand, within CSW01_00785at 144.352 kb on - strand, within CSW01_00785at 144.369 kb on - strand, within CSW01_00785at 144.435 kb on + strand, within CSW01_00785at 144.435 kb on + strand, within CSW01_00785at 144.443 kb on - strand, within CSW01_00785at 144.443 kb on - strand, within CSW01_00785at 144.454 kb on + strand, within CSW01_00785at 144.455 kb on - strand, within CSW01_00785at 144.526 kb on + strand, within CSW01_00785at 144.526 kb on + strand, within CSW01_00785at 144.527 kb on + strand, within CSW01_00785at 144.535 kb on - strand, within CSW01_00785at 144.535 kb on - strand, within CSW01_00785at 144.553 kb on + strand, within CSW01_00785at 144.561 kb on - strand, within CSW01_00785at 144.592 kb on + strand, within CSW01_00785at 144.593 kb on - strand, within CSW01_00785at 144.651 kb on + strand, within CSW01_00785at 144.651 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.673 kb on + strand, within CSW01_00785at 144.678 kb on + strand, within CSW01_00785at 144.681 kb on - strand, within CSW01_00785at 144.681 kb on - strand, within CSW01_00785at 144.681 kb on - strand, within CSW01_00785at 144.681 kb on - strand, within CSW01_00785at 144.753 kb on + strand, within CSW01_00785

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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142,547 + CSW01_00770 0.28 -0.7
142,554 + CSW01_00770 0.31 +0.7
142,554 + CSW01_00770 0.31 -0.1
142,554 + CSW01_00770 0.31 +0.2
142,554 + CSW01_00770 0.31 +1.0
142,554 + CSW01_00770 0.31 -0.1
142,554 + CSW01_00770 0.31 +0.8
142,554 + CSW01_00770 0.31 +0.5
142,556 + CSW01_00770 0.32 -1.9
142,556 - CSW01_00770 0.32 +0.8
142,562 - CSW01_00770 0.34 +1.2
142,572 - CSW01_00770 0.38 +0.1
142,585 - CSW01_00770 0.44 -0.1
142,682 + CSW01_00770 0.84 -0.9
142,682 + CSW01_00770 0.84 +0.5
142,682 + CSW01_00770 0.84 -1.6
142,682 + CSW01_00770 0.84 -0.6
142,682 + CSW01_00770 0.84 -0.5
142,697 + -0.5
142,700 + -0.2
142,763 + -2.9
142,766 - -0.0
142,766 - +0.9
142,766 - -0.1
142,766 - +1.5
142,847 - CSW01_00775 0.11 +0.5
142,852 - CSW01_00775 0.12 -0.6
142,857 - CSW01_00775 0.13 +0.5
142,908 + CSW01_00775 0.21 -0.2
142,957 + CSW01_00775 0.28 +0.9
142,965 - CSW01_00775 0.30 +0.1
142,980 - CSW01_00775 0.32 -0.3
143,015 + CSW01_00775 0.37 -0.4
143,015 + CSW01_00775 0.37 -1.4
143,064 + CSW01_00775 0.45 +0.2
143,064 + CSW01_00775 0.45 -0.4
143,064 + CSW01_00775 0.45 +0.7
143,064 + CSW01_00775 0.45 -1.1
143,064 + CSW01_00775 0.45 -0.2
143,064 + CSW01_00775 0.45 +0.2
143,072 - CSW01_00775 0.46 +1.3
143,072 - CSW01_00775 0.46 -0.4
143,072 - CSW01_00775 0.46 -0.6
143,072 - CSW01_00775 0.46 +0.0
143,072 - CSW01_00775 0.46 -0.9
143,088 + CSW01_00775 0.49 +0.6
143,088 + CSW01_00775 0.49 -0.7
143,096 - CSW01_00775 0.50 -1.3
143,096 - CSW01_00775 0.50 -0.0
143,150 + CSW01_00775 0.58 +0.4
143,165 + CSW01_00775 0.61 -0.3
143,173 - CSW01_00775 0.62 -0.6
143,190 + CSW01_00775 0.65 -0.3
143,235 - CSW01_00775 0.72 +0.1
143,255 + CSW01_00775 0.75 +0.6
143,331 - CSW01_00775 0.87 +0.9
143,350 + CSW01_00775 0.90 -0.1
143,350 + CSW01_00775 0.90 +0.0
143,350 + CSW01_00775 0.90 +0.0
143,358 - +0.6
143,358 - -3.0
143,358 - +0.2
143,358 - -2.4
143,358 - +0.2
143,368 - +1.1
143,370 + +0.4
143,371 - -3.3
143,395 + -0.7
143,403 - -0.6
143,417 + +0.3
143,494 + CSW01_00780 0.10 -2.6
143,502 - CSW01_00780 0.12 -1.3
143,562 - CSW01_00780 0.28 +0.9
143,573 - CSW01_00780 0.31 -0.7
143,597 + CSW01_00780 0.38 -1.0
143,696 + CSW01_00780 0.65 -2.9
143,711 + CSW01_00780 0.69 +0.0
143,723 + CSW01_00780 0.72 -1.8
143,768 + CSW01_00780 0.84 +0.5
143,929 + -0.0
143,937 - -0.2
143,937 - +0.9
144,010 - CSW01_00785 0.13 +2.0
144,016 + CSW01_00785 0.14 +0.2
144,023 + CSW01_00785 0.14 +0.4
144,050 + CSW01_00785 0.17 +0.2
144,106 - CSW01_00785 0.22 +1.4
144,122 + CSW01_00785 0.23 +1.1
144,122 - CSW01_00785 0.23 -0.1
144,206 - CSW01_00785 0.31 -2.4
144,206 - CSW01_00785 0.31 -1.3
144,323 - CSW01_00785 0.41 +0.1
144,352 - CSW01_00785 0.44 -0.4
144,369 - CSW01_00785 0.45 +0.7
144,435 + CSW01_00785 0.51 -1.5
144,435 + CSW01_00785 0.51 +0.1
144,443 - CSW01_00785 0.52 -0.4
144,443 - CSW01_00785 0.52 +1.0
144,454 + CSW01_00785 0.53 +1.0
144,455 - CSW01_00785 0.53 -0.8
144,526 + CSW01_00785 0.60 +0.3
144,526 + CSW01_00785 0.60 +0.2
144,527 + CSW01_00785 0.60 +0.9
144,535 - CSW01_00785 0.60 +0.4
144,535 - CSW01_00785 0.60 -2.9
144,553 + CSW01_00785 0.62 +1.2
144,561 - CSW01_00785 0.63 +0.2
144,592 + CSW01_00785 0.66 +0.0
144,593 - CSW01_00785 0.66 +0.7
144,651 + CSW01_00785 0.71 -0.5
144,651 + CSW01_00785 0.71 -0.4
144,673 + CSW01_00785 0.73 +0.9
144,673 + CSW01_00785 0.73 -0.1
144,673 + CSW01_00785 0.73 -0.6
144,673 + CSW01_00785 0.73 +0.5
144,673 + CSW01_00785 0.73 -0.1
144,673 + CSW01_00785 0.73 -1.6
144,673 + CSW01_00785 0.73 -1.0
144,673 + CSW01_00785 0.73 -1.3
144,673 + CSW01_00785 0.73 -0.5
144,673 + CSW01_00785 0.73 -0.8
144,673 + CSW01_00785 0.73 +1.2
144,673 + CSW01_00785 0.73 +1.0
144,673 + CSW01_00785 0.73 +0.2
144,678 + CSW01_00785 0.73 -0.6
144,681 - CSW01_00785 0.74 -0.8
144,681 - CSW01_00785 0.74 +0.4
144,681 - CSW01_00785 0.74 +1.1
144,681 - CSW01_00785 0.74 -0.2
144,753 + CSW01_00785 0.80 +0.3

Or see this region's nucleotide sequence