Experiment: LB_Anaerobic_60MIN_ZN4B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00710 and CSW01_00715 are separated by 61 nucleotides CSW01_00715 and CSW01_00720 are separated by 227 nucleotides CSW01_00720 and CSW01_00725 overlap by 35 nucleotides CSW01_00725 and CSW01_00730 are separated by 116 nucleotides CSW01_00730 and CSW01_00735 are separated by 48 nucleotides
CSW01_00710: CSW01_00710 - DUF4145 domain-containing protein, at 133,966 to 134,334
_00710
CSW01_00715: CSW01_00715 - hypothetical protein, at 134,396 to 134,527
_00715
CSW01_00720: CSW01_00720 - hydrolase, at 134,755 to 134,871
_00720
CSW01_00725: CSW01_00725 - hypothetical protein, at 134,837 to 135,094
_00725
CSW01_00730: CSW01_00730 - lysoplasmalogenase, at 135,211 to 135,840
_00730
CSW01_00735: CSW01_00735 - DUF1145 domain-containing protein, at 135,889 to 136,155
_00735
Position (kb) 134
135
136 Strain fitness (log2 ratio) -2
-1
0
1
2 at 133.905 kb on + strand at 133.923 kb on - strand at 133.948 kb on + strand at 134.005 kb on + strand, within CSW01_00710 at 134.023 kb on + strand, within CSW01_00710 at 134.036 kb on - strand, within CSW01_00710 at 134.036 kb on - strand, within CSW01_00710 at 134.061 kb on - strand, within CSW01_00710 at 134.159 kb on + strand, within CSW01_00710 at 134.184 kb on - strand, within CSW01_00710 at 134.222 kb on + strand, within CSW01_00710 at 134.306 kb on + strand at 134.539 kb on + strand at 134.637 kb on - strand at 135.179 kb on + strand at 135.179 kb on + strand at 135.179 kb on + strand at 135.187 kb on - strand at 135.187 kb on - strand at 135.200 kb on + strand at 135.274 kb on + strand, within CSW01_00730 at 135.282 kb on + strand, within CSW01_00730 at 135.290 kb on - strand, within CSW01_00730 at 135.300 kb on - strand, within CSW01_00730 at 135.337 kb on - strand, within CSW01_00730 at 135.337 kb on - strand, within CSW01_00730 at 135.337 kb on - strand, within CSW01_00730 at 135.343 kb on + strand, within CSW01_00730 at 135.353 kb on + strand, within CSW01_00730 at 135.353 kb on + strand, within CSW01_00730 at 135.362 kb on + strand, within CSW01_00730 at 135.520 kb on + strand, within CSW01_00730 at 135.601 kb on - strand, within CSW01_00730 at 135.619 kb on + strand, within CSW01_00730 at 135.645 kb on + strand, within CSW01_00730 at 135.712 kb on + strand, within CSW01_00730 at 135.778 kb on + strand at 135.811 kb on + strand at 135.811 kb on + strand at 135.811 kb on + strand at 135.819 kb on - strand at 135.819 kb on - strand at 135.819 kb on - strand at 136.016 kb on - strand, within CSW01_00735
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B remove 133,905 + -0.4 133,923 - -2.1 133,948 + -1.5 134,005 + CSW01_00710 0.11 -0.5 134,023 + CSW01_00710 0.15 -1.7 134,036 - CSW01_00710 0.19 -0.1 134,036 - CSW01_00710 0.19 -1.2 134,061 - CSW01_00710 0.26 -0.6 134,159 + CSW01_00710 0.52 +0.2 134,184 - CSW01_00710 0.59 -0.3 134,222 + CSW01_00710 0.69 +1.1 134,306 + +1.1 134,539 + -0.1 134,637 - +0.6 135,179 + -0.9 135,179 + +0.3 135,179 + -0.6 135,187 - +0.5 135,187 - +0.1 135,200 + +0.5 135,274 + CSW01_00730 0.10 +0.6 135,282 + CSW01_00730 0.11 -2.1 135,290 - CSW01_00730 0.13 +1.8 135,300 - CSW01_00730 0.14 +0.6 135,337 - CSW01_00730 0.20 +0.6 135,337 - CSW01_00730 0.20 +1.1 135,337 - CSW01_00730 0.20 +0.1 135,343 + CSW01_00730 0.21 +0.9 135,353 + CSW01_00730 0.23 +0.6 135,353 + CSW01_00730 0.23 -0.6 135,362 + CSW01_00730 0.24 -0.0 135,520 + CSW01_00730 0.49 +0.9 135,601 - CSW01_00730 0.62 -0.4 135,619 + CSW01_00730 0.65 +0.5 135,645 + CSW01_00730 0.69 +0.5 135,712 + CSW01_00730 0.80 +0.2 135,778 + -0.9 135,811 + -0.2 135,811 + +0.8 135,811 + +0.6 135,819 - +0.0 135,819 - -0.3 135,819 - +0.9 136,016 - CSW01_00735 0.48 -0.1
Or see this region's nucleotide sequence