Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00655

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00645 and CSW01_00650 overlap by 32 nucleotidesCSW01_00650 and CSW01_00655 are separated by 2 nucleotidesCSW01_00655 and CSW01_00660 are separated by 109 nucleotides CSW01_00645: CSW01_00645 - DUF484 domain-containing protein, at 121,339 to 122,037 _00645 CSW01_00650: CSW01_00650 - tyrosine recombinase XerC, at 122,006 to 122,941 _00650 CSW01_00655: CSW01_00655 - 2-haloalkanoic acid dehalogenase, at 122,944 to 123,663 _00655 CSW01_00660: CSW01_00660 - sensor domain-containing phosphodiesterase, at 123,773 to 126,262 _00660 Position (kb) 122 123 124Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 121.962 kb on + strand, within CSW01_00645at 121.962 kb on + strand, within CSW01_00645at 121.970 kb on - strandat 121.971 kb on - strandat 121.998 kb on - strandat 122.099 kb on - strandat 122.108 kb on - strand, within CSW01_00650at 122.108 kb on - strand, within CSW01_00650at 122.115 kb on + strand, within CSW01_00650at 122.123 kb on - strand, within CSW01_00650at 122.128 kb on + strand, within CSW01_00650at 122.128 kb on + strand, within CSW01_00650at 122.136 kb on + strand, within CSW01_00650at 122.141 kb on + strand, within CSW01_00650at 122.141 kb on + strand, within CSW01_00650at 122.148 kb on + strand, within CSW01_00650at 122.153 kb on + strand, within CSW01_00650at 122.166 kb on - strand, within CSW01_00650at 122.308 kb on + strand, within CSW01_00650at 122.309 kb on + strand, within CSW01_00650at 122.314 kb on + strand, within CSW01_00650at 122.314 kb on + strand, within CSW01_00650at 122.314 kb on + strand, within CSW01_00650at 122.322 kb on - strand, within CSW01_00650at 122.322 kb on - strand, within CSW01_00650at 122.322 kb on - strand, within CSW01_00650at 122.334 kb on + strand, within CSW01_00650at 122.395 kb on + strand, within CSW01_00650at 122.455 kb on + strand, within CSW01_00650at 122.467 kb on + strand, within CSW01_00650at 122.468 kb on + strand, within CSW01_00650at 122.533 kb on - strand, within CSW01_00650at 122.533 kb on - strand, within CSW01_00650at 122.533 kb on - strand, within CSW01_00650at 122.584 kb on + strand, within CSW01_00650at 122.585 kb on + strand, within CSW01_00650at 122.585 kb on + strand, within CSW01_00650at 122.585 kb on + strand, within CSW01_00650at 122.593 kb on - strand, within CSW01_00650at 122.804 kb on - strand, within CSW01_00650at 122.821 kb on - strand, within CSW01_00650at 122.821 kb on - strand, within CSW01_00650at 122.821 kb on - strand, within CSW01_00650at 122.833 kb on + strand, within CSW01_00650at 122.890 kb on + strandat 122.891 kb on + strandat 122.891 kb on + strandat 122.899 kb on - strandat 122.926 kb on + strandat 122.926 kb on + strandat 122.926 kb on + strandat 122.977 kb on + strandat 123.010 kb on - strandat 123.015 kb on + strandat 123.022 kb on - strand, within CSW01_00655at 123.057 kb on + strand, within CSW01_00655at 123.074 kb on + strand, within CSW01_00655at 123.117 kb on + strand, within CSW01_00655at 123.125 kb on - strand, within CSW01_00655at 123.142 kb on + strand, within CSW01_00655at 123.145 kb on - strand, within CSW01_00655at 123.145 kb on - strand, within CSW01_00655at 123.149 kb on + strand, within CSW01_00655at 123.150 kb on - strand, within CSW01_00655at 123.150 kb on - strand, within CSW01_00655at 123.157 kb on - strand, within CSW01_00655at 123.157 kb on - strand, within CSW01_00655at 123.173 kb on + strand, within CSW01_00655at 123.181 kb on - strand, within CSW01_00655at 123.199 kb on + strand, within CSW01_00655at 123.216 kb on + strand, within CSW01_00655at 123.253 kb on - strand, within CSW01_00655at 123.266 kb on + strand, within CSW01_00655at 123.274 kb on - strand, within CSW01_00655at 123.400 kb on + strand, within CSW01_00655at 123.400 kb on + strand, within CSW01_00655at 123.408 kb on - strand, within CSW01_00655at 123.408 kb on - strand, within CSW01_00655at 123.412 kb on + strand, within CSW01_00655at 123.412 kb on + strand, within CSW01_00655at 123.420 kb on - strand, within CSW01_00655at 123.432 kb on + strand, within CSW01_00655at 123.433 kb on - strand, within CSW01_00655at 123.435 kb on - strand, within CSW01_00655at 123.458 kb on + strand, within CSW01_00655at 123.458 kb on + strand, within CSW01_00655at 123.458 kb on + strand, within CSW01_00655at 123.460 kb on + strand, within CSW01_00655at 123.476 kb on - strand, within CSW01_00655at 123.493 kb on - strand, within CSW01_00655at 123.615 kb on - strandat 123.622 kb on + strandat 123.806 kb on + strandat 123.878 kb on + strandat 123.878 kb on + strandat 123.878 kb on + strandat 123.878 kb on + strandat 123.886 kb on - strandat 123.886 kb on - strandat 123.886 kb on - strandat 123.904 kb on - strandat 123.911 kb on - strandat 123.913 kb on + strandat 123.932 kb on + strandat 123.995 kb on + strandat 124.041 kb on + strand, within CSW01_00660at 124.049 kb on + strand, within CSW01_00660at 124.049 kb on + strand, within CSW01_00660at 124.054 kb on + strand, within CSW01_00660at 124.057 kb on - strand, within CSW01_00660at 124.062 kb on - strand, within CSW01_00660at 124.089 kb on + strand, within CSW01_00660at 124.111 kb on + strand, within CSW01_00660at 124.120 kb on + strand, within CSW01_00660at 124.128 kb on - strand, within CSW01_00660at 124.150 kb on + strand, within CSW01_00660at 124.150 kb on + strand, within CSW01_00660at 124.150 kb on + strand, within CSW01_00660at 124.158 kb on - strand, within CSW01_00660at 124.181 kb on - strand, within CSW01_00660at 124.203 kb on - strand, within CSW01_00660at 124.225 kb on - strand, within CSW01_00660at 124.234 kb on + strand, within CSW01_00660at 124.306 kb on - strand, within CSW01_00660at 124.333 kb on + strand, within CSW01_00660at 124.333 kb on + strand, within CSW01_00660at 124.333 kb on + strand, within CSW01_00660at 124.341 kb on - strand, within CSW01_00660at 124.355 kb on + strand, within CSW01_00660at 124.372 kb on + strand, within CSW01_00660at 124.372 kb on + strand, within CSW01_00660at 124.372 kb on + strand, within CSW01_00660at 124.372 kb on + strand, within CSW01_00660at 124.380 kb on - strand, within CSW01_00660at 124.380 kb on - strand, within CSW01_00660at 124.380 kb on - strand, within CSW01_00660at 124.380 kb on - strand, within CSW01_00660at 124.396 kb on + strand, within CSW01_00660at 124.466 kb on + strand, within CSW01_00660at 124.475 kb on + strand, within CSW01_00660at 124.485 kb on + strand, within CSW01_00660at 124.495 kb on + strand, within CSW01_00660at 124.503 kb on - strand, within CSW01_00660at 124.563 kb on + strand, within CSW01_00660at 124.644 kb on - strand, within CSW01_00660

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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121,962 + CSW01_00645 0.89 +0.6
121,962 + CSW01_00645 0.89 +1.3
121,970 - -1.1
121,971 - -2.2
121,998 - +1.3
122,099 - +0.4
122,108 - CSW01_00650 0.11 +0.4
122,108 - CSW01_00650 0.11 -1.1
122,115 + CSW01_00650 0.12 -3.1
122,123 - CSW01_00650 0.12 +2.0
122,128 + CSW01_00650 0.13 -1.4
122,128 + CSW01_00650 0.13 -1.6
122,136 + CSW01_00650 0.14 -3.4
122,141 + CSW01_00650 0.14 -0.8
122,141 + CSW01_00650 0.14 -1.1
122,148 + CSW01_00650 0.15 +1.5
122,153 + CSW01_00650 0.16 -0.3
122,166 - CSW01_00650 0.17 +0.8
122,308 + CSW01_00650 0.32 -0.3
122,309 + CSW01_00650 0.32 +0.0
122,314 + CSW01_00650 0.33 -2.4
122,314 + CSW01_00650 0.33 -1.1
122,314 + CSW01_00650 0.33 -2.3
122,322 - CSW01_00650 0.34 +1.2
122,322 - CSW01_00650 0.34 +0.4
122,322 - CSW01_00650 0.34 -0.6
122,334 + CSW01_00650 0.35 +1.2
122,395 + CSW01_00650 0.42 -2.1
122,455 + CSW01_00650 0.48 +0.9
122,467 + CSW01_00650 0.49 -3.7
122,468 + CSW01_00650 0.49 -0.2
122,533 - CSW01_00650 0.56 +1.4
122,533 - CSW01_00650 0.56 +0.4
122,533 - CSW01_00650 0.56 +1.1
122,584 + CSW01_00650 0.62 -0.6
122,585 + CSW01_00650 0.62 -1.7
122,585 + CSW01_00650 0.62 +1.4
122,585 + CSW01_00650 0.62 -2.7
122,593 - CSW01_00650 0.63 -2.6
122,804 - CSW01_00650 0.85 -2.1
122,821 - CSW01_00650 0.87 +0.1
122,821 - CSW01_00650 0.87 -1.4
122,821 - CSW01_00650 0.87 -1.6
122,833 + CSW01_00650 0.88 -0.1
122,890 + -2.6
122,891 + +0.9
122,891 + -1.9
122,899 - -1.0
122,926 + -1.0
122,926 + -1.1
122,926 + -0.8
122,977 + +0.1
123,010 - -0.1
123,015 + -4.6
123,022 - CSW01_00655 0.11 -0.3
123,057 + CSW01_00655 0.16 -0.4
123,074 + CSW01_00655 0.18 -0.3
123,117 + CSW01_00655 0.24 -0.3
123,125 - CSW01_00655 0.25 -2.6
123,142 + CSW01_00655 0.28 +0.5
123,145 - CSW01_00655 0.28 +0.3
123,145 - CSW01_00655 0.28 -0.3
123,149 + CSW01_00655 0.28 +0.1
123,150 - CSW01_00655 0.29 +0.6
123,150 - CSW01_00655 0.29 +0.9
123,157 - CSW01_00655 0.30 -1.3
123,157 - CSW01_00655 0.30 +1.1
123,173 + CSW01_00655 0.32 +0.4
123,181 - CSW01_00655 0.33 -2.4
123,199 + CSW01_00655 0.35 -0.0
123,216 + CSW01_00655 0.38 -0.2
123,253 - CSW01_00655 0.43 -1.0
123,266 + CSW01_00655 0.45 +0.1
123,274 - CSW01_00655 0.46 -0.9
123,400 + CSW01_00655 0.63 +2.7
123,400 + CSW01_00655 0.63 +0.4
123,408 - CSW01_00655 0.64 -1.5
123,408 - CSW01_00655 0.64 -0.9
123,412 + CSW01_00655 0.65 +0.1
123,412 + CSW01_00655 0.65 -1.0
123,420 - CSW01_00655 0.66 +0.1
123,432 + CSW01_00655 0.68 -0.1
123,433 - CSW01_00655 0.68 -0.8
123,435 - CSW01_00655 0.68 +0.1
123,458 + CSW01_00655 0.71 -0.1
123,458 + CSW01_00655 0.71 -0.6
123,458 + CSW01_00655 0.71 -0.5
123,460 + CSW01_00655 0.72 +0.1
123,476 - CSW01_00655 0.74 -2.9
123,493 - CSW01_00655 0.76 -0.4
123,615 - -0.6
123,622 + -1.4
123,806 + +0.3
123,878 + -0.2
123,878 + -0.6
123,878 + +1.3
123,878 + +0.0
123,886 - -0.2
123,886 - +1.7
123,886 - +0.2
123,904 - -0.0
123,911 - -1.6
123,913 + -0.4
123,932 + -1.6
123,995 + -1.6
124,041 + CSW01_00660 0.11 +0.9
124,049 + CSW01_00660 0.11 -1.1
124,049 + CSW01_00660 0.11 -0.1
124,054 + CSW01_00660 0.11 -0.6
124,057 - CSW01_00660 0.11 +1.6
124,062 - CSW01_00660 0.12 -1.4
124,089 + CSW01_00660 0.13 +0.4
124,111 + CSW01_00660 0.14 -2.0
124,120 + CSW01_00660 0.14 +0.2
124,128 - CSW01_00660 0.14 +0.2
124,150 + CSW01_00660 0.15 +0.2
124,150 + CSW01_00660 0.15 +1.1
124,150 + CSW01_00660 0.15 -3.0
124,158 - CSW01_00660 0.15 +1.7
124,181 - CSW01_00660 0.16 +0.2
124,203 - CSW01_00660 0.17 +0.5
124,225 - CSW01_00660 0.18 +0.9
124,234 + CSW01_00660 0.19 +0.8
124,306 - CSW01_00660 0.21 +1.9
124,333 + CSW01_00660 0.22 +2.6
124,333 + CSW01_00660 0.22 +0.9
124,333 + CSW01_00660 0.22 +0.5
124,341 - CSW01_00660 0.23 +0.4
124,355 + CSW01_00660 0.23 -2.3
124,372 + CSW01_00660 0.24 -0.0
124,372 + CSW01_00660 0.24 +0.4
124,372 + CSW01_00660 0.24 +0.2
124,372 + CSW01_00660 0.24 -0.2
124,380 - CSW01_00660 0.24 +1.7
124,380 - CSW01_00660 0.24 +0.0
124,380 - CSW01_00660 0.24 +0.8
124,380 - CSW01_00660 0.24 +0.9
124,396 + CSW01_00660 0.25 +1.7
124,466 + CSW01_00660 0.28 -0.6
124,475 + CSW01_00660 0.28 -0.0
124,485 + CSW01_00660 0.29 +0.3
124,495 + CSW01_00660 0.29 +0.6
124,503 - CSW01_00660 0.29 -0.1
124,563 + CSW01_00660 0.32 -0.1
124,644 - CSW01_00660 0.35 +0.8

Or see this region's nucleotide sequence