Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00385

Experiment: LB_Anaerobic_60MIN_ZN4B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00375 and CSW01_00380 are separated by 103 nucleotidesCSW01_00380 and CSW01_00385 are separated by 88 nucleotidesCSW01_00385 and CSW01_00390 are separated by 75 nucleotides CSW01_00375: CSW01_00375 - Bcr/CflA family drug resistance efflux transporter, at 69,297 to 70,499 _00375 CSW01_00380: CSW01_00380 - hypothetical protein, at 70,603 to 70,887 _00380 CSW01_00385: CSW01_00385 - transcriptional regulator AsnC, at 70,976 to 71,437 _00385 CSW01_00390: CSW01_00390 - GGDEF domain-containing protein, at 71,513 to 73,819 _00390 Position (kb) 70 71 72Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 70.024 kb on + strand, within CSW01_00375at 70.024 kb on + strand, within CSW01_00375at 70.024 kb on + strand, within CSW01_00375at 70.031 kb on + strand, within CSW01_00375at 70.032 kb on - strand, within CSW01_00375at 70.032 kb on - strand, within CSW01_00375at 70.032 kb on - strand, within CSW01_00375at 70.044 kb on - strand, within CSW01_00375at 70.057 kb on + strand, within CSW01_00375at 70.093 kb on + strand, within CSW01_00375at 70.103 kb on + strand, within CSW01_00375at 70.111 kb on - strand, within CSW01_00375at 70.132 kb on - strand, within CSW01_00375at 70.158 kb on + strand, within CSW01_00375at 70.166 kb on - strand, within CSW01_00375at 70.177 kb on + strand, within CSW01_00375at 70.177 kb on + strand, within CSW01_00375at 70.177 kb on + strand, within CSW01_00375at 70.177 kb on + strand, within CSW01_00375at 70.177 kb on + strand, within CSW01_00375at 70.177 kb on + strand, within CSW01_00375at 70.177 kb on + strand, within CSW01_00375at 70.185 kb on - strand, within CSW01_00375at 70.185 kb on - strand, within CSW01_00375at 70.185 kb on - strand, within CSW01_00375at 70.210 kb on - strand, within CSW01_00375at 70.215 kb on - strand, within CSW01_00375at 70.215 kb on - strand, within CSW01_00375at 70.215 kb on - strand, within CSW01_00375at 70.230 kb on + strand, within CSW01_00375at 70.254 kb on + strand, within CSW01_00375at 70.260 kb on + strand, within CSW01_00375at 70.286 kb on - strand, within CSW01_00375at 70.291 kb on - strand, within CSW01_00375at 70.291 kb on - strand, within CSW01_00375at 70.293 kb on - strand, within CSW01_00375at 70.328 kb on + strand, within CSW01_00375at 70.351 kb on + strand, within CSW01_00375at 70.351 kb on + strand, within CSW01_00375at 70.359 kb on - strand, within CSW01_00375at 70.359 kb on - strand, within CSW01_00375at 70.364 kb on + strand, within CSW01_00375at 70.367 kb on - strand, within CSW01_00375at 70.374 kb on + strand, within CSW01_00375at 70.377 kb on - strand, within CSW01_00375at 70.382 kb on + strandat 70.382 kb on - strandat 70.390 kb on - strandat 70.390 kb on - strandat 70.390 kb on - strandat 70.390 kb on - strandat 70.409 kb on - strandat 70.486 kb on - strandat 70.528 kb on + strandat 70.528 kb on + strandat 70.528 kb on + strandat 70.528 kb on + strandat 70.528 kb on + strandat 70.528 kb on + strandat 70.536 kb on - strandat 70.536 kb on - strandat 70.536 kb on - strandat 70.554 kb on - strandat 70.576 kb on + strandat 70.576 kb on + strandat 70.591 kb on + strandat 70.605 kb on + strandat 70.771 kb on - strand, within CSW01_00380at 70.799 kb on + strand, within CSW01_00380at 70.850 kb on + strand, within CSW01_00380at 70.894 kb on - strandat 70.944 kb on + strandat 70.945 kb on + strandat 70.965 kb on + strandat 70.973 kb on - strandat 70.973 kb on - strandat 70.975 kb on - strandat 70.980 kb on + strandat 70.981 kb on - strandat 70.988 kb on - strandat 70.994 kb on + strandat 70.995 kb on - strandat 70.995 kb on - strandat 70.995 kb on - strandat 71.030 kb on + strand, within CSW01_00385at 71.117 kb on + strand, within CSW01_00385at 71.132 kb on + strand, within CSW01_00385at 71.132 kb on + strand, within CSW01_00385at 71.140 kb on - strand, within CSW01_00385at 71.150 kb on - strand, within CSW01_00385at 71.150 kb on - strand, within CSW01_00385at 71.241 kb on - strand, within CSW01_00385at 71.241 kb on - strand, within CSW01_00385at 71.273 kb on + strand, within CSW01_00385at 71.274 kb on - strand, within CSW01_00385at 71.281 kb on - strand, within CSW01_00385at 71.292 kb on + strand, within CSW01_00385at 71.342 kb on + strand, within CSW01_00385at 71.342 kb on - strand, within CSW01_00385at 71.413 kb on - strandat 71.430 kb on - strandat 71.500 kb on - strandat 71.548 kb on - strandat 71.556 kb on - strandat 71.563 kb on + strandat 71.573 kb on + strandat 71.586 kb on + strandat 71.587 kb on + strandat 71.594 kb on - strandat 71.636 kb on + strandat 71.636 kb on + strandat 71.636 kb on + strandat 71.644 kb on - strandat 71.644 kb on - strandat 71.703 kb on + strandat 71.737 kb on + strandat 71.737 kb on + strandat 71.737 kb on + strandat 71.737 kb on + strandat 71.737 kb on + strandat 71.737 kb on - strandat 71.737 kb on - strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.739 kb on + strandat 71.745 kb on - strand, within CSW01_00390at 71.745 kb on - strand, within CSW01_00390at 71.745 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.747 kb on - strand, within CSW01_00390at 71.771 kb on - strand, within CSW01_00390at 71.773 kb on - strand, within CSW01_00390at 71.773 kb on - strand, within CSW01_00390at 71.825 kb on - strand, within CSW01_00390at 71.825 kb on - strand, within CSW01_00390at 71.830 kb on - strand, within CSW01_00390at 71.830 kb on - strand, within CSW01_00390at 71.875 kb on + strand, within CSW01_00390at 71.883 kb on - strand, within CSW01_00390at 71.929 kb on + strand, within CSW01_00390at 71.929 kb on + strand, within CSW01_00390at 71.937 kb on - strand, within CSW01_00390at 71.937 kb on - strand, within CSW01_00390at 71.954 kb on + strand, within CSW01_00390at 71.962 kb on - strand, within CSW01_00390at 72.012 kb on - strand, within CSW01_00390at 72.031 kb on + strand, within CSW01_00390at 72.039 kb on - strand, within CSW01_00390at 72.052 kb on - strand, within CSW01_00390at 72.057 kb on + strand, within CSW01_00390at 72.058 kb on + strand, within CSW01_00390at 72.085 kb on - strand, within CSW01_00390at 72.104 kb on + strand, within CSW01_00390at 72.109 kb on + strand, within CSW01_00390at 72.109 kb on + strand, within CSW01_00390at 72.117 kb on - strand, within CSW01_00390at 72.137 kb on + strand, within CSW01_00390at 72.145 kb on - strand, within CSW01_00390at 72.153 kb on - strand, within CSW01_00390at 72.156 kb on + strand, within CSW01_00390at 72.156 kb on + strand, within CSW01_00390at 72.204 kb on + strand, within CSW01_00390at 72.204 kb on + strand, within CSW01_00390at 72.204 kb on + strand, within CSW01_00390at 72.204 kb on + strand, within CSW01_00390at 72.204 kb on + strand, within CSW01_00390at 72.204 kb on + strand, within CSW01_00390at 72.204 kb on + strand, within CSW01_00390at 72.204 kb on + strand, within CSW01_00390at 72.204 kb on + strand, within CSW01_00390at 72.204 kb on + strand, within CSW01_00390at 72.204 kb on + strand, within CSW01_00390at 72.212 kb on - strand, within CSW01_00390at 72.212 kb on - strand, within CSW01_00390at 72.212 kb on - strand, within CSW01_00390at 72.216 kb on - strand, within CSW01_00390at 72.221 kb on - strand, within CSW01_00390at 72.222 kb on - strand, within CSW01_00390at 72.259 kb on + strand, within CSW01_00390at 72.261 kb on - strand, within CSW01_00390at 72.261 kb on - strand, within CSW01_00390at 72.287 kb on - strand, within CSW01_00390at 72.319 kb on + strand, within CSW01_00390at 72.319 kb on - strand, within CSW01_00390at 72.327 kb on + strand, within CSW01_00390at 72.327 kb on + strand, within CSW01_00390at 72.335 kb on - strand, within CSW01_00390at 72.335 kb on - strand, within CSW01_00390at 72.379 kb on - strand, within CSW01_00390at 72.390 kb on + strand, within CSW01_00390at 72.416 kb on + strand, within CSW01_00390

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_60MIN_ZN4B
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70,024 + CSW01_00375 0.60 -0.0
70,024 + CSW01_00375 0.60 -1.1
70,024 + CSW01_00375 0.60 -1.0
70,031 + CSW01_00375 0.61 -0.5
70,032 - CSW01_00375 0.61 -0.3
70,032 - CSW01_00375 0.61 +0.6
70,032 - CSW01_00375 0.61 +0.5
70,044 - CSW01_00375 0.62 -0.4
70,057 + CSW01_00375 0.63 -0.5
70,093 + CSW01_00375 0.66 +0.2
70,103 + CSW01_00375 0.67 +0.2
70,111 - CSW01_00375 0.68 +0.4
70,132 - CSW01_00375 0.69 -1.1
70,158 + CSW01_00375 0.72 +0.2
70,166 - CSW01_00375 0.72 +0.1
70,177 + CSW01_00375 0.73 +0.1
70,177 + CSW01_00375 0.73 -0.9
70,177 + CSW01_00375 0.73 +0.7
70,177 + CSW01_00375 0.73 -0.1
70,177 + CSW01_00375 0.73 -1.2
70,177 + CSW01_00375 0.73 +0.4
70,177 + CSW01_00375 0.73 -0.2
70,185 - CSW01_00375 0.74 +1.1
70,185 - CSW01_00375 0.74 -0.2
70,185 - CSW01_00375 0.74 +0.3
70,210 - CSW01_00375 0.76 +1.3
70,215 - CSW01_00375 0.76 +0.2
70,215 - CSW01_00375 0.76 -0.6
70,215 - CSW01_00375 0.76 -0.6
70,230 + CSW01_00375 0.78 +0.2
70,254 + CSW01_00375 0.80 +0.3
70,260 + CSW01_00375 0.80 +0.2
70,286 - CSW01_00375 0.82 -0.8
70,291 - CSW01_00375 0.83 -0.4
70,291 - CSW01_00375 0.83 -0.1
70,293 - CSW01_00375 0.83 +0.2
70,328 + CSW01_00375 0.86 +0.1
70,351 + CSW01_00375 0.88 -0.9
70,351 + CSW01_00375 0.88 -1.9
70,359 - CSW01_00375 0.88 +1.0
70,359 - CSW01_00375 0.88 +0.6
70,364 + CSW01_00375 0.89 -1.9
70,367 - CSW01_00375 0.89 -0.9
70,374 + CSW01_00375 0.90 -0.0
70,377 - CSW01_00375 0.90 -0.6
70,382 + -2.7
70,382 - -0.3
70,390 - +1.2
70,390 - -0.6
70,390 - -0.3
70,390 - +0.0
70,409 - -2.1
70,486 - -1.7
70,528 + -0.4
70,528 + +0.2
70,528 + -0.3
70,528 + +0.4
70,528 + +0.9
70,528 + +0.7
70,536 - -0.7
70,536 - +0.2
70,536 - +0.6
70,554 - +0.1
70,576 + +1.0
70,576 + -1.4
70,591 + +0.4
70,605 + +0.1
70,771 - CSW01_00380 0.59 +0.6
70,799 + CSW01_00380 0.69 -0.6
70,850 + CSW01_00380 0.87 +2.2
70,894 - -0.5
70,944 + -0.0
70,945 + +0.2
70,965 + +1.8
70,973 - +0.2
70,973 - -0.5
70,975 - -1.3
70,980 + +0.1
70,981 - -0.6
70,988 - +0.8
70,994 + -0.4
70,995 - +0.1
70,995 - -0.1
70,995 - +0.3
71,030 + CSW01_00385 0.12 -0.1
71,117 + CSW01_00385 0.31 +0.0
71,132 + CSW01_00385 0.34 +0.0
71,132 + CSW01_00385 0.34 +0.4
71,140 - CSW01_00385 0.35 -2.8
71,150 - CSW01_00385 0.38 -4.0
71,150 - CSW01_00385 0.38 -2.4
71,241 - CSW01_00385 0.57 -0.5
71,241 - CSW01_00385 0.57 -0.6
71,273 + CSW01_00385 0.64 -1.0
71,274 - CSW01_00385 0.65 -0.4
71,281 - CSW01_00385 0.66 -0.1
71,292 + CSW01_00385 0.68 +0.1
71,342 + CSW01_00385 0.79 -0.2
71,342 - CSW01_00385 0.79 -1.1
71,413 - +0.7
71,430 - +0.4
71,500 - -0.1
71,548 - +0.2
71,556 - -0.2
71,563 + -0.0
71,573 + -0.4
71,586 + -1.4
71,587 + -1.0
71,594 - -1.6
71,636 + -3.1
71,636 + -0.7
71,636 + +0.1
71,644 - +0.0
71,644 - +0.1
71,703 + +0.6
71,737 + +0.3
71,737 + +0.7
71,737 + +1.9
71,737 + +0.7
71,737 + +0.7
71,737 - -0.8
71,737 - +0.6
71,739 + +0.9
71,739 + +0.2
71,739 + +0.3
71,739 + +0.3
71,739 + +0.1
71,739 + -0.6
71,739 + -0.9
71,739 + +0.1
71,739 + -0.5
71,745 - CSW01_00390 0.10 -0.7
71,745 - CSW01_00390 0.10 -2.4
71,745 - CSW01_00390 0.10 -0.5
71,747 - CSW01_00390 0.10 -1.2
71,747 - CSW01_00390 0.10 -0.1
71,747 - CSW01_00390 0.10 +0.6
71,747 - CSW01_00390 0.10 -1.1
71,747 - CSW01_00390 0.10 -1.6
71,747 - CSW01_00390 0.10 -1.1
71,747 - CSW01_00390 0.10 -1.1
71,747 - CSW01_00390 0.10 +0.9
71,747 - CSW01_00390 0.10 +1.3
71,771 - CSW01_00390 0.11 +0.2
71,773 - CSW01_00390 0.11 -2.0
71,773 - CSW01_00390 0.11 -1.5
71,825 - CSW01_00390 0.14 +0.7
71,825 - CSW01_00390 0.14 -0.1
71,830 - CSW01_00390 0.14 -1.3
71,830 - CSW01_00390 0.14 +0.5
71,875 + CSW01_00390 0.16 +0.3
71,883 - CSW01_00390 0.16 +0.7
71,929 + CSW01_00390 0.18 +1.1
71,929 + CSW01_00390 0.18 +1.8
71,937 - CSW01_00390 0.18 +0.5
71,937 - CSW01_00390 0.18 +0.4
71,954 + CSW01_00390 0.19 -0.1
71,962 - CSW01_00390 0.19 -0.2
72,012 - CSW01_00390 0.22 +0.1
72,031 + CSW01_00390 0.22 +2.8
72,039 - CSW01_00390 0.23 +0.4
72,052 - CSW01_00390 0.23 -1.1
72,057 + CSW01_00390 0.24 +0.2
72,058 + CSW01_00390 0.24 -1.0
72,085 - CSW01_00390 0.25 -0.8
72,104 + CSW01_00390 0.26 +1.0
72,109 + CSW01_00390 0.26 -0.5
72,109 + CSW01_00390 0.26 +0.3
72,117 - CSW01_00390 0.26 -0.2
72,137 + CSW01_00390 0.27 -0.7
72,145 - CSW01_00390 0.27 -0.7
72,153 - CSW01_00390 0.28 -0.4
72,156 + CSW01_00390 0.28 +1.0
72,156 + CSW01_00390 0.28 -1.2
72,204 + CSW01_00390 0.30 -0.2
72,204 + CSW01_00390 0.30 -0.2
72,204 + CSW01_00390 0.30 -0.6
72,204 + CSW01_00390 0.30 +0.3
72,204 + CSW01_00390 0.30 +0.7
72,204 + CSW01_00390 0.30 +0.1
72,204 + CSW01_00390 0.30 -1.9
72,204 + CSW01_00390 0.30 -1.1
72,204 + CSW01_00390 0.30 +0.8
72,204 + CSW01_00390 0.30 -0.1
72,204 + CSW01_00390 0.30 -0.3
72,212 - CSW01_00390 0.30 +0.2
72,212 - CSW01_00390 0.30 -0.3
72,212 - CSW01_00390 0.30 +0.6
72,216 - CSW01_00390 0.30 +1.9
72,221 - CSW01_00390 0.31 +0.1
72,222 - CSW01_00390 0.31 -0.3
72,259 + CSW01_00390 0.32 -0.6
72,261 - CSW01_00390 0.32 -0.1
72,261 - CSW01_00390 0.32 -0.8
72,287 - CSW01_00390 0.34 +0.4
72,319 + CSW01_00390 0.35 -0.9
72,319 - CSW01_00390 0.35 -0.2
72,327 + CSW01_00390 0.35 +0.4
72,327 + CSW01_00390 0.35 +0.2
72,335 - CSW01_00390 0.36 -0.8
72,335 - CSW01_00390 0.36 -0.4
72,379 - CSW01_00390 0.38 -0.3
72,390 + CSW01_00390 0.38 -0.7
72,416 + CSW01_00390 0.39 +0.3

Or see this region's nucleotide sequence