Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00875

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS00870 and CA265_RS00875 are separated by 556 nucleotidesCA265_RS00875 and CA265_RS00880 are separated by 18 nucleotidesCA265_RS00880 and CA265_RS00885 overlap by 1 nucleotides CA265_RS00870: CA265_RS00870 - hypothetical protein, at 209,701 to 210,792 _RS00870 CA265_RS00875: CA265_RS00875 - alkaline phosphatase, at 211,349 to 212,317 _RS00875 CA265_RS00880: CA265_RS00880 - hypothetical protein, at 212,336 to 213,265 _RS00880 CA265_RS00885: CA265_RS00885 - hypothetical protein, at 213,265 to 214,017 _RS00885 Position (kb) 211 212 213Strain fitness (log2 ratio) -2 -1 0 1 2 3at 210.351 kb on + strand, within CA265_RS00870at 210.356 kb on - strand, within CA265_RS00870at 210.356 kb on - strand, within CA265_RS00870at 210.356 kb on - strand, within CA265_RS00870at 210.360 kb on + strand, within CA265_RS00870at 210.373 kb on + strand, within CA265_RS00870at 210.375 kb on + strand, within CA265_RS00870at 210.399 kb on - strand, within CA265_RS00870at 210.399 kb on - strand, within CA265_RS00870at 210.399 kb on - strand, within CA265_RS00870at 210.403 kb on + strand, within CA265_RS00870at 210.403 kb on + strand, within CA265_RS00870at 210.404 kb on - strand, within CA265_RS00870at 210.421 kb on - strand, within CA265_RS00870at 210.444 kb on + strand, within CA265_RS00870at 210.444 kb on + strand, within CA265_RS00870at 210.448 kb on + strand, within CA265_RS00870at 210.457 kb on + strand, within CA265_RS00870at 210.474 kb on + strand, within CA265_RS00870at 210.475 kb on - strand, within CA265_RS00870at 210.477 kb on + strand, within CA265_RS00870at 210.532 kb on - strand, within CA265_RS00870at 210.538 kb on - strand, within CA265_RS00870at 210.540 kb on + strand, within CA265_RS00870at 210.541 kb on - strand, within CA265_RS00870at 210.541 kb on - strand, within CA265_RS00870at 210.556 kb on - strand, within CA265_RS00870at 210.622 kb on - strand, within CA265_RS00870at 210.627 kb on + strand, within CA265_RS00870at 210.627 kb on + strand, within CA265_RS00870at 210.760 kb on - strandat 210.760 kb on - strandat 210.791 kb on - strandat 210.827 kb on + strandat 210.865 kb on + strandat 210.866 kb on - strandat 210.903 kb on - strandat 210.906 kb on - strandat 210.906 kb on - strandat 210.933 kb on - strandat 210.947 kb on - strandat 211.029 kb on - strandat 211.217 kb on + strandat 211.224 kb on + strandat 211.279 kb on + strandat 211.292 kb on - strandat 211.292 kb on - strandat 211.319 kb on - strandat 211.322 kb on + strandat 211.323 kb on - strandat 211.337 kb on - strandat 211.423 kb on - strandat 211.479 kb on + strand, within CA265_RS00875at 211.503 kb on + strand, within CA265_RS00875at 211.552 kb on - strand, within CA265_RS00875at 211.597 kb on - strand, within CA265_RS00875at 211.631 kb on + strand, within CA265_RS00875at 211.631 kb on + strand, within CA265_RS00875at 211.632 kb on - strand, within CA265_RS00875at 211.670 kb on - strand, within CA265_RS00875at 211.937 kb on - strand, within CA265_RS00875at 212.013 kb on - strand, within CA265_RS00875at 212.039 kb on + strand, within CA265_RS00875at 212.040 kb on - strand, within CA265_RS00875at 212.085 kb on - strand, within CA265_RS00875at 212.113 kb on - strand, within CA265_RS00875at 212.134 kb on + strand, within CA265_RS00875at 212.139 kb on - strand, within CA265_RS00875at 212.152 kb on + strand, within CA265_RS00875at 212.270 kb on + strandat 212.271 kb on - strandat 212.271 kb on - strandat 212.274 kb on + strandat 212.275 kb on - strandat 212.292 kb on - strandat 212.316 kb on - strandat 212.325 kb on + strandat 212.372 kb on - strandat 212.507 kb on - strand, within CA265_RS00880at 212.541 kb on + strand, within CA265_RS00880at 212.573 kb on + strand, within CA265_RS00880at 212.574 kb on - strand, within CA265_RS00880at 212.740 kb on - strand, within CA265_RS00880at 212.743 kb on - strand, within CA265_RS00880at 212.743 kb on - strand, within CA265_RS00880at 212.743 kb on - strand, within CA265_RS00880at 212.769 kb on - strand, within CA265_RS00880at 212.774 kb on - strand, within CA265_RS00880at 212.774 kb on - strand, within CA265_RS00880at 212.800 kb on + strand, within CA265_RS00880at 212.815 kb on + strand, within CA265_RS00880at 212.903 kb on - strand, within CA265_RS00880at 212.908 kb on - strand, within CA265_RS00880at 212.908 kb on - strand, within CA265_RS00880at 212.950 kb on - strand, within CA265_RS00880at 213.013 kb on + strand, within CA265_RS00880at 213.044 kb on - strand, within CA265_RS00880at 213.063 kb on + strand, within CA265_RS00880at 213.064 kb on - strand, within CA265_RS00880at 213.098 kb on + strand, within CA265_RS00880at 213.117 kb on + strand, within CA265_RS00880at 213.117 kb on + strand, within CA265_RS00880at 213.118 kb on - strand, within CA265_RS00880at 213.121 kb on + strand, within CA265_RS00880at 213.121 kb on + strand, within CA265_RS00880at 213.178 kb on + strandat 213.242 kb on + strandat 213.243 kb on - strandat 213.247 kb on - strandat 213.280 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
210,351 + CA265_RS00870 0.60 +0.6
210,356 - CA265_RS00870 0.60 +0.1
210,356 - CA265_RS00870 0.60 +0.1
210,356 - CA265_RS00870 0.60 -1.3
210,360 + CA265_RS00870 0.60 +1.0
210,373 + CA265_RS00870 0.62 +0.3
210,375 + CA265_RS00870 0.62 -0.2
210,399 - CA265_RS00870 0.64 -0.3
210,399 - CA265_RS00870 0.64 -0.2
210,399 - CA265_RS00870 0.64 +0.8
210,403 + CA265_RS00870 0.64 -0.2
210,403 + CA265_RS00870 0.64 +1.2
210,404 - CA265_RS00870 0.64 +0.6
210,421 - CA265_RS00870 0.66 +0.8
210,444 + CA265_RS00870 0.68 +0.4
210,444 + CA265_RS00870 0.68 +0.5
210,448 + CA265_RS00870 0.68 -0.1
210,457 + CA265_RS00870 0.69 +0.5
210,474 + CA265_RS00870 0.71 +0.3
210,475 - CA265_RS00870 0.71 -1.2
210,477 + CA265_RS00870 0.71 -0.1
210,532 - CA265_RS00870 0.76 +0.0
210,538 - CA265_RS00870 0.77 +0.2
210,540 + CA265_RS00870 0.77 +0.2
210,541 - CA265_RS00870 0.77 +0.6
210,541 - CA265_RS00870 0.77 +0.1
210,556 - CA265_RS00870 0.78 -0.8
210,622 - CA265_RS00870 0.84 +0.1
210,627 + CA265_RS00870 0.85 +0.5
210,627 + CA265_RS00870 0.85 +0.5
210,760 - +0.4
210,760 - +1.3
210,791 - +0.2
210,827 + +0.1
210,865 + +0.7
210,866 - +0.3
210,903 - +0.1
210,906 - +1.2
210,906 - -0.4
210,933 - +0.2
210,947 - -0.2
211,029 - -0.2
211,217 + +0.6
211,224 + +0.9
211,279 + +1.4
211,292 - -1.3
211,292 - -0.7
211,319 - -0.0
211,322 + +0.3
211,323 - +0.1
211,337 - -0.4
211,423 - -0.8
211,479 + CA265_RS00875 0.13 +1.1
211,503 + CA265_RS00875 0.16 +0.8
211,552 - CA265_RS00875 0.21 -0.0
211,597 - CA265_RS00875 0.26 +0.4
211,631 + CA265_RS00875 0.29 +0.2
211,631 + CA265_RS00875 0.29 -0.9
211,632 - CA265_RS00875 0.29 +1.1
211,670 - CA265_RS00875 0.33 +1.2
211,937 - CA265_RS00875 0.61 +0.7
212,013 - CA265_RS00875 0.69 +0.0
212,039 + CA265_RS00875 0.71 +1.4
212,040 - CA265_RS00875 0.71 +0.1
212,085 - CA265_RS00875 0.76 -0.7
212,113 - CA265_RS00875 0.79 +0.6
212,134 + CA265_RS00875 0.81 +1.1
212,139 - CA265_RS00875 0.82 -0.1
212,152 + CA265_RS00875 0.83 +1.3
212,270 + +1.0
212,271 - +0.1
212,271 - -0.4
212,274 + +0.8
212,275 - -0.4
212,292 - +0.5
212,316 - -1.9
212,325 + +1.1
212,372 - -1.5
212,507 - CA265_RS00880 0.18 -0.5
212,541 + CA265_RS00880 0.22 -0.4
212,573 + CA265_RS00880 0.25 +0.0
212,574 - CA265_RS00880 0.26 +0.0
212,740 - CA265_RS00880 0.43 +1.7
212,743 - CA265_RS00880 0.44 +0.1
212,743 - CA265_RS00880 0.44 -1.8
212,743 - CA265_RS00880 0.44 +0.1
212,769 - CA265_RS00880 0.47 +0.1
212,774 - CA265_RS00880 0.47 +0.6
212,774 - CA265_RS00880 0.47 -0.5
212,800 + CA265_RS00880 0.50 +1.2
212,815 + CA265_RS00880 0.52 +1.7
212,903 - CA265_RS00880 0.61 +0.5
212,908 - CA265_RS00880 0.62 +0.3
212,908 - CA265_RS00880 0.62 +0.6
212,950 - CA265_RS00880 0.66 -0.3
213,013 + CA265_RS00880 0.73 +0.8
213,044 - CA265_RS00880 0.76 -0.0
213,063 + CA265_RS00880 0.78 +0.0
213,064 - CA265_RS00880 0.78 +0.1
213,098 + CA265_RS00880 0.82 -0.4
213,117 + CA265_RS00880 0.84 +1.2
213,117 + CA265_RS00880 0.84 +0.7
213,118 - CA265_RS00880 0.84 -0.0
213,121 + CA265_RS00880 0.84 +0.2
213,121 + CA265_RS00880 0.84 +0.9
213,178 + +1.3
213,242 + +2.8
213,243 - -0.2
213,247 - +0.8
213,280 - -0.1

Or see this region's nucleotide sequence