Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29130

Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29125 and AO356_29130 are separated by 48 nucleotidesAO356_29130 and AO356_29135 are separated by 126 nucleotides AO356_29125: AO356_29125 - vanillate monooxygenase, at 6,770,154 to 6,771,197 _29125 AO356_29130: AO356_29130 - MFS transporter, at 6,771,246 to 6,772,445 _29130 AO356_29135: AO356_29135 - RND transporter, at 6,772,572 to 6,775,103 _29135 Position (kb) 6771 6772 6773Strain fitness (log2 ratio) -2 -1 0 1 2at 6770.774 kb on - strand, within AO356_29125at 6771.170 kb on + strandat 6771.172 kb on + strandat 6771.172 kb on + strandat 6771.173 kb on - strandat 6771.173 kb on - strandat 6771.190 kb on + strandat 6771.219 kb on - strandat 6771.755 kb on - strand, within AO356_29130at 6771.812 kb on - strand, within AO356_29130at 6771.932 kb on - strand, within AO356_29130at 6772.057 kb on + strand, within AO356_29130at 6772.057 kb on + strand, within AO356_29130at 6772.058 kb on - strand, within AO356_29130at 6772.060 kb on + strand, within AO356_29130at 6772.183 kb on + strand, within AO356_29130at 6772.341 kb on - strandat 6772.538 kb on + strandat 6772.589 kb on + strandat 6772.965 kb on - strand, within AO356_29135at 6772.990 kb on + strand, within AO356_29135at 6772.990 kb on + strand, within AO356_29135at 6772.990 kb on + strand, within AO356_29135at 6772.991 kb on - strand, within AO356_29135at 6773.179 kb on + strand, within AO356_29135at 6773.362 kb on + strand, within AO356_29135

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM
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6,770,774 - AO356_29125 0.59 -0.7
6,771,170 + -1.5
6,771,172 + -0.5
6,771,172 + +0.3
6,771,173 - -0.2
6,771,173 - +0.6
6,771,190 + +0.5
6,771,219 - -0.9
6,771,755 - AO356_29130 0.42 -2.2
6,771,812 - AO356_29130 0.47 +0.7
6,771,932 - AO356_29130 0.57 +1.8
6,772,057 + AO356_29130 0.68 +1.3
6,772,057 + AO356_29130 0.68 +1.0
6,772,058 - AO356_29130 0.68 -1.9
6,772,060 + AO356_29130 0.68 -0.3
6,772,183 + AO356_29130 0.78 -1.4
6,772,341 - -0.7
6,772,538 + +0.3
6,772,589 + +1.2
6,772,965 - AO356_29135 0.16 +0.3
6,772,990 + AO356_29135 0.17 -0.9
6,772,990 + AO356_29135 0.17 -0.1
6,772,990 + AO356_29135 0.17 +0.2
6,772,991 - AO356_29135 0.17 +1.8
6,773,179 + AO356_29135 0.24 -0.6
6,773,362 + AO356_29135 0.31 +0.3

Or see this region's nucleotide sequence