Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26035 and AO356_26040 are separated by 85 nucleotides AO356_26040 and AO356_26045 overlap by 1 nucleotides AO356_26045 and AO356_26050 are separated by 271 nucleotides
AO356_26035: AO356_26035 - alpha/beta hydrolase, at 5,891,191 to 5,892,222
_26035
AO356_26040: AO356_26040 - hypothetical protein, at 5,892,308 to 5,892,742
_26040
AO356_26045: AO356_26045 - metal-binding protein, at 5,892,742 to 5,893,188
_26045
AO356_26050: AO356_26050 - chemotaxis protein, at 5,893,460 to 5,895,454
_26050
Position (kb)
5892
5893 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5891.329 kb on + strand, within AO356_26035 at 5891.336 kb on + strand, within AO356_26035 at 5891.391 kb on + strand, within AO356_26035 at 5891.392 kb on - strand, within AO356_26035 at 5891.447 kb on + strand, within AO356_26035 at 5891.447 kb on + strand, within AO356_26035 at 5891.478 kb on - strand, within AO356_26035 at 5891.508 kb on + strand, within AO356_26035 at 5891.508 kb on + strand, within AO356_26035 at 5891.508 kb on + strand, within AO356_26035 at 5891.509 kb on - strand, within AO356_26035 at 5891.582 kb on + strand, within AO356_26035 at 5891.585 kb on + strand, within AO356_26035 at 5891.585 kb on + strand, within AO356_26035 at 5891.643 kb on - strand, within AO356_26035 at 5891.803 kb on + strand, within AO356_26035 at 5891.858 kb on + strand, within AO356_26035 at 5891.864 kb on + strand, within AO356_26035 at 5891.864 kb on + strand, within AO356_26035 at 5892.036 kb on + strand, within AO356_26035 at 5892.036 kb on + strand, within AO356_26035 at 5892.037 kb on - strand, within AO356_26035 at 5892.038 kb on + strand, within AO356_26035 at 5892.038 kb on + strand, within AO356_26035 at 5892.039 kb on - strand, within AO356_26035 at 5892.039 kb on - strand, within AO356_26035 at 5892.039 kb on - strand, within AO356_26035 at 5892.039 kb on - strand, within AO356_26035 at 5892.039 kb on - strand, within AO356_26035 at 5892.091 kb on - strand, within AO356_26035 at 5892.092 kb on + strand, within AO356_26035 at 5892.092 kb on + strand, within AO356_26035 at 5892.487 kb on - strand, within AO356_26040 at 5892.729 kb on + strand at 5892.729 kb on + strand at 5892.729 kb on + strand at 5892.730 kb on - strand at 5892.806 kb on + strand, within AO356_26045 at 5893.233 kb on + strand at 5893.298 kb on + strand at 5893.299 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM remove 5,891,329 + AO356_26035 0.13 +0.4 5,891,336 + AO356_26035 0.14 -0.1 5,891,391 + AO356_26035 0.19 -0.2 5,891,392 - AO356_26035 0.19 -0.5 5,891,447 + AO356_26035 0.25 -0.9 5,891,447 + AO356_26035 0.25 +0.1 5,891,478 - AO356_26035 0.28 +0.2 5,891,508 + AO356_26035 0.31 +0.7 5,891,508 + AO356_26035 0.31 -3.0 5,891,508 + AO356_26035 0.31 -0.8 5,891,509 - AO356_26035 0.31 +1.4 5,891,582 + AO356_26035 0.38 +0.2 5,891,585 + AO356_26035 0.38 -1.4 5,891,585 + AO356_26035 0.38 -0.4 5,891,643 - AO356_26035 0.44 +0.6 5,891,803 + AO356_26035 0.59 -0.9 5,891,858 + AO356_26035 0.65 +0.6 5,891,864 + AO356_26035 0.65 +1.7 5,891,864 + AO356_26035 0.65 -0.5 5,892,036 + AO356_26035 0.82 -1.5 5,892,036 + AO356_26035 0.82 -2.0 5,892,037 - AO356_26035 0.82 +1.2 5,892,038 + AO356_26035 0.82 +0.4 5,892,038 + AO356_26035 0.82 +0.4 5,892,039 - AO356_26035 0.82 +2.2 5,892,039 - AO356_26035 0.82 +0.1 5,892,039 - AO356_26035 0.82 -0.2 5,892,039 - AO356_26035 0.82 +0.1 5,892,039 - AO356_26035 0.82 -1.0 5,892,091 - AO356_26035 0.87 -0.2 5,892,092 + AO356_26035 0.87 -2.1 5,892,092 + AO356_26035 0.87 +0.1 5,892,487 - AO356_26040 0.41 -0.3 5,892,729 + +0.9 5,892,729 + -0.5 5,892,729 + -0.1 5,892,730 - +0.1 5,892,806 + AO356_26045 0.14 +0.6 5,893,233 + -1.0 5,893,298 + +1.4 5,893,299 - -1.3
Or see this region's nucleotide sequence