Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24000 and AO356_24005 overlap by 4 nucleotides AO356_24005 and AO356_24010 overlap by 4 nucleotides AO356_24010 and AO356_24015 overlap by 11 nucleotides
AO356_24000: AO356_24000 - hydroxyacid dehydrogenase, at 5,380,607 to 5,382,031
_24000
AO356_24005: AO356_24005 - aspartate aminotransferase, at 5,382,028 to 5,383,239
_24005
AO356_24010: AO356_24010 - amino acid ABC transporter, at 5,383,236 to 5,383,970
_24010
AO356_24015: AO356_24015 - amino acid ABC transporter, at 5,383,960 to 5,384,748
_24015
Position (kb) 5382
5383
5384 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5381.651 kb on - strand, within AO356_24000 at 5381.651 kb on - strand, within AO356_24000 at 5381.735 kb on + strand, within AO356_24000 at 5381.736 kb on - strand, within AO356_24000 at 5381.736 kb on - strand, within AO356_24000 at 5381.736 kb on - strand, within AO356_24000 at 5381.771 kb on + strand, within AO356_24000 at 5381.771 kb on + strand, within AO356_24000 at 5381.771 kb on + strand, within AO356_24000 at 5381.772 kb on - strand, within AO356_24000 at 5381.772 kb on - strand, within AO356_24000 at 5381.822 kb on + strand, within AO356_24000 at 5382.037 kb on + strand at 5382.037 kb on + strand at 5382.038 kb on - strand at 5382.571 kb on + strand, within AO356_24005 at 5382.657 kb on + strand, within AO356_24005 at 5382.658 kb on - strand, within AO356_24005 at 5382.658 kb on - strand, within AO356_24005 at 5382.658 kb on - strand, within AO356_24005 at 5382.751 kb on + strand, within AO356_24005 at 5382.751 kb on + strand, within AO356_24005 at 5382.923 kb on - strand, within AO356_24005 at 5383.129 kb on + strand at 5383.130 kb on - strand at 5383.130 kb on - strand at 5383.290 kb on + strand at 5383.311 kb on + strand, within AO356_24010 at 5383.498 kb on - strand, within AO356_24010 at 5383.498 kb on - strand, within AO356_24010 at 5383.821 kb on + strand, within AO356_24010 at 5383.821 kb on + strand, within AO356_24010 at 5383.822 kb on - strand, within AO356_24010 at 5383.929 kb on + strand at 5384.056 kb on + strand, within AO356_24015 at 5384.056 kb on + strand, within AO356_24015 at 5384.056 kb on + strand, within AO356_24015 at 5384.056 kb on + strand, within AO356_24015 at 5384.057 kb on - strand, within AO356_24015 at 5384.057 kb on - strand, within AO356_24015 at 5384.057 kb on - strand, within AO356_24015
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM remove 5,381,651 - AO356_24000 0.73 -0.5 5,381,651 - AO356_24000 0.73 +0.5 5,381,735 + AO356_24000 0.79 -0.7 5,381,736 - AO356_24000 0.79 +1.5 5,381,736 - AO356_24000 0.79 +1.6 5,381,736 - AO356_24000 0.79 +0.8 5,381,771 + AO356_24000 0.82 -0.2 5,381,771 + AO356_24000 0.82 +1.0 5,381,771 + AO356_24000 0.82 -0.5 5,381,772 - AO356_24000 0.82 -1.9 5,381,772 - AO356_24000 0.82 +0.9 5,381,822 + AO356_24000 0.85 -1.1 5,382,037 + +0.6 5,382,037 + +0.1 5,382,038 - +0.3 5,382,571 + AO356_24005 0.45 -2.4 5,382,657 + AO356_24005 0.52 -2.1 5,382,658 - AO356_24005 0.52 -1.4 5,382,658 - AO356_24005 0.52 +1.5 5,382,658 - AO356_24005 0.52 +0.5 5,382,751 + AO356_24005 0.60 -0.7 5,382,751 + AO356_24005 0.60 -0.1 5,382,923 - AO356_24005 0.74 -0.8 5,383,129 + +0.7 5,383,130 - +0.7 5,383,130 - +0.2 5,383,290 + -2.4 5,383,311 + AO356_24010 0.10 -0.4 5,383,498 - AO356_24010 0.36 +0.8 5,383,498 - AO356_24010 0.36 -1.9 5,383,821 + AO356_24010 0.80 -0.4 5,383,821 + AO356_24010 0.80 +0.5 5,383,822 - AO356_24010 0.80 -2.0 5,383,929 + +0.7 5,384,056 + AO356_24015 0.12 +1.2 5,384,056 + AO356_24015 0.12 +0.8 5,384,056 + AO356_24015 0.12 -3.1 5,384,056 + AO356_24015 0.12 +1.5 5,384,057 - AO356_24015 0.12 +2.2 5,384,057 - AO356_24015 0.12 -2.4 5,384,057 - AO356_24015 0.12 -1.6
Or see this region's nucleotide sequence