Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_12800

Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium chloride 200 mM
2,915,484	+		AO356_12795	0.15	+0.5
2,915,484	+		AO356_12795	0.15	+2.3
2,915,484	+		AO356_12795	0.15	+0.2
2,915,484	+		AO356_12795	0.15	+2.7
2,915,484	+		AO356_12795	0.15	+0.8
2,915,484	+		AO356_12795	0.15	+0.1
2,915,484	+		AO356_12795	0.15	-0.5
2,915,485	-		AO356_12795	0.15	+1.3
2,915,485	-		AO356_12795	0.15	-0.8
2,915,485	-		AO356_12795	0.15	+0.5
2,915,485	-		AO356_12795	0.15	-0.7
2,915,485	-		AO356_12795	0.15	-0.9
2,915,485	-		AO356_12795	0.15	+1.1
2,915,503	+		AO356_12795	0.16	+0.9
2,915,981	+		AO356_12795	0.58	-0.6
2,915,981	+		AO356_12795	0.58	+0.9
2,915,982	-		AO356_12795	0.59	-0.3
2,915,982	-		AO356_12795	0.59	+0.1
2,915,982	-		AO356_12795	0.59	-0.7
2,915,982	-		AO356_12795	0.59	-0.3
2,915,982	-		AO356_12795	0.59	-0.2
2,915,982	-		AO356_12795	0.59	+1.2
2,915,982	-		AO356_12795	0.59	-1.6
2,915,982	-		AO356_12795	0.59	-2.0
2,916,071	+		AO356_12795	0.66	-1.3
2,916,071	+		AO356_12795	0.66	+0.2
2,916,072	-		AO356_12795	0.66	+0.9
2,916,073	+		AO356_12795	0.67	-1.5
2,916,073	+		AO356_12795	0.67	+0.9
2,916,073	+		AO356_12795	0.67	+0.3
2,916,074	-		AO356_12795	0.67	+1.5
2,916,074	-		AO356_12795	0.67	-0.3
2,916,074	-		AO356_12795	0.67	+0.2
2,916,074	-		AO356_12795	0.67	+0.1
2,916,208	-		AO356_12795	0.78	-0.1
2,916,209	+		AO356_12795	0.79	-1.7
2,916,209	+		AO356_12795	0.79	+0.3
2,916,209	+		AO356_12795	0.79	-0.0
2,916,209	+		AO356_12795	0.79	-0.1
2,916,209	+		AO356_12795	0.79	-0.2
2,916,209	+		AO356_12795	0.79	-1.9
2,916,209	+		AO356_12795	0.79	-2.2
2,916,210	-		AO356_12795	0.79	+0.0
2,916,210	-		AO356_12795	0.79	-1.3
2,916,210	-		AO356_12795	0.79	-0.3
2,916,210	-		AO356_12795	0.79	-1.1
2,916,210	-		AO356_12795	0.79	-0.1
2,916,210	-		AO356_12795	0.79	-0.9
2,916,210	-		AO356_12795	0.79	+0.9
2,916,210	-		AO356_12795	0.79	-0.4
2,916,210	-		AO356_12795	0.79	-0.3
2,916,210	-		AO356_12795	0.79	+0.2
2,916,210	-		AO356_12795	0.79	-1.5
2,916,210	-		AO356_12795	0.79	-1.4
2,916,371	+				+1.1
2,916,371	+				+1.2
2,916,371	+				-0.6
2,916,460	+				+0.5
2,916,460	+				-1.6
2,916,461	-				+0.5
2,916,461	-				+1.8
2,916,529	+				+0.2
2,916,529	+				-0.1
2,916,530	-				+0.8
2,916,530	-				+0.3
2,916,544	+				-0.5
2,916,545	-				-0.4
2,916,545	-				+1.3
2,916,560	-				+0.4
2,916,808	+		AO356_12800	0.29	+0.1
2,916,808	+		AO356_12800	0.29	-0.6
2,916,808	+		AO356_12800	0.29	+0.7
2,916,808	+		AO356_12800	0.29	-1.0
2,916,808	+		AO356_12800	0.29	-0.5
2,916,808	+		AO356_12800	0.29	+1.6
2,916,808	+		AO356_12800	0.29	+3.5
2,916,809	-		AO356_12800	0.29	+1.7
2,916,809	-		AO356_12800	0.29	-0.2
2,916,809	-		AO356_12800	0.29	-0.2
2,916,809	-		AO356_12800	0.29	-2.4
2,916,809	-		AO356_12800	0.29	+0.1
2,916,811	+		AO356_12800	0.29	+2.0
2,916,811	+		AO356_12800	0.29	+2.4
2,916,850	+		AO356_12800	0.32	+0.6
2,916,851	-		AO356_12800	0.32	+0.2
2,917,037	+		AO356_12800	0.47	+0.6
2,917,037	+		AO356_12800	0.47	-1.6
2,917,037	+		AO356_12800	0.47	+0.2
2,917,037	+		AO356_12800	0.47	+0.1
2,917,038	-		AO356_12800	0.47	+0.1
2,917,038	-		AO356_12800	0.47	-0.9
2,917,038	-		AO356_12800	0.47	-0.8
2,917,038	-		AO356_12800	0.47	-1.1
2,917,098	+		AO356_12800	0.52	+0.2
2,917,098	+		AO356_12800	0.52	-0.2
2,917,098	+		AO356_12800	0.52	+0.3
2,917,098	+		AO356_12800	0.52	-0.3
2,917,099	-		AO356_12800	0.52	+0.3
2,917,270	+		AO356_12800	0.66	-0.6
2,917,270	+		AO356_12800	0.66	-0.1
2,917,270	+		AO356_12800	0.66	+0.5
2,917,270	+		AO356_12800	0.66	-0.1
2,917,271	-		AO356_12800	0.66	+0.3
2,917,271	-		AO356_12800	0.66	-0.7
2,917,271	-		AO356_12800	0.66	+2.8
2,917,271	-		AO356_12800	0.66	+0.8
2,917,345	+		AO356_12800	0.72	+1.7
2,917,345	+		AO356_12800	0.72	+0.3
2,917,346	-		AO356_12800	0.72	+0.8
2,917,346	-		AO356_12800	0.72	-1.1
2,917,346	-		AO356_12800	0.72	+0.5
2,917,346	-		AO356_12800	0.72	+0.1
2,917,369	+		AO356_12800	0.74	+1.6
2,917,370	-		AO356_12800	0.74	+0.9
2,917,475	+		AO356_12800	0.82	-2.4
2,917,476	-		AO356_12800	0.82	-2.4
2,917,514	-		AO356_12800	0.85	+0.6
2,917,843	+				-0.3
2,917,843	+				-0.1
2,917,844	-				-0.4
2,917,844	-				+0.3
2,917,844	-				-0.9
2,917,844	-				-1.3
2,917,860	+				+0.7
2,917,860	+				-0.3
2,917,860	+				-0.3
2,917,861	-				-2.2
2,917,906	-				+1.1
2,917,906	-				+0.0
2,917,963	+				-0.1
2,917,968	+				-1.6
2,917,969	-				+0.6
2,917,969	-				-0.2
2,917,969	-				-1.2
2,917,969	-				-1.2
2,917,969	-				+0.2
2,917,969	-				+0.8
2,918,075	+		AO356_12805	0.14	-1.0
2,918,075	+		AO356_12805	0.14	-1.4
2,918,075	+		AO356_12805	0.14	-1.5
2,918,075	+		AO356_12805	0.14	+0.2
2,918,075	+		AO356_12805	0.14	-1.9
2,918,075	+		AO356_12805	0.14	+0.3
2,918,075	+		AO356_12805	0.14	-0.8
2,918,075	+		AO356_12805	0.14	+0.2
2,918,076	-		AO356_12805	0.14	+0.6
2,918,076	-		AO356_12805	0.14	-1.0
2,918,076	-		AO356_12805	0.14	-2.8
2,918,084	+		AO356_12805	0.15	-0.6
2,918,084	+		AO356_12805	0.15	-0.8
2,918,085	-		AO356_12805	0.16	-1.3
2,918,163	+		AO356_12805	0.30	-0.1
2,918,164	-		AO356_12805	0.30	-0.9
2,918,172	+		AO356_12805	0.32	+0.1
2,918,172	+		AO356_12805	0.32	-0.6
2,918,173	-		AO356_12805	0.32	-0.2
2,918,173	-		AO356_12805	0.32	-0.0
2,918,173	-		AO356_12805	0.32	-0.3
2,918,204	+		AO356_12805	0.38	+0.8
2,918,204	+		AO356_12805	0.38	+1.0
2,918,204	+		AO356_12805	0.38	+1.9
2,918,204	+		AO356_12805	0.38	+0.3
2,918,204	+		AO356_12805	0.38	+0.2
2,918,204	+		AO356_12805	0.38	-2.0
2,918,204	+		AO356_12805	0.38	+0.0
2,918,204	+		AO356_12805	0.38	+1.2
2,918,204	+		AO356_12805	0.38	+2.3
2,918,204	+		AO356_12805	0.38	+0.4
2,918,205	-		AO356_12805	0.38	-0.5
2,918,205	-		AO356_12805	0.38	-0.0
2,918,205	-		AO356_12805	0.38	+0.1
2,918,205	-		AO356_12805	0.38	+0.7
2,918,205	-		AO356_12805	0.38	+0.2
2,918,205	-		AO356_12805	0.38	+0.7
2,918,205	-		AO356_12805	0.38	-1.3
2,918,205	-		AO356_12805	0.38	-1.9
2,918,205	-		AO356_12805	0.38	-2.2
2,918,205	-		AO356_12805	0.38	+1.1
2,918,459	+		AO356_12805	0.85	-0.2
2,918,459	+		AO356_12805	0.85	-0.9
2,918,459	+		AO356_12805	0.85	-1.2
2,918,459	+		AO356_12805	0.85	-2.6
2,918,459	+		AO356_12805	0.85	+0.6
2,918,459	+		AO356_12805	0.85	-0.6
2,918,460	-		AO356_12805	0.85	+1.0
2,918,460	-		AO356_12805	0.85	-0.5
2,918,460	-		AO356_12805	0.85	-0.7
2,918,460	-		AO356_12805	0.85	+0.9
2,918,494	-				+0.5
2,918,494	-				+1.8
2,918,540	+				-0.7
2,918,541	-				+2.0
2,918,541	-				+1.4
2,918,550	+				+1.2
2,918,550	+				-1.0
2,918,550	+				-2.7
2,918,550	+				+0.2
2,918,550	+				+0.8
2,918,550	+				-1.1
2,918,550	+				-1.0
2,918,551	-				+0.0
2,918,551	-				+2.2
2,918,551	-				+1.5
2,918,559	+				+0.1
2,918,559	+				-0.6
2,918,560	-				+1.2
2,918,560	-				+1.4
2,918,570	+				-0.4
2,918,570	+				+0.8
2,918,570	+				-0.7
2,918,571	-				-0.7
2,918,597	+				+0.0
2,918,597	+				+1.6
2,918,598	-				-0.1
2,918,598	-				+0.1
2,918,616	+				-0.0
2,918,616	+				-0.2