Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04175 and AO356_04180 are separated by 256 nucleotides AO356_04180 and AO356_04185 are separated by 68 nucleotides AO356_04185 and AO356_04190 are separated by 936 nucleotides
AO356_04175: AO356_04175 - hypothetical protein, at 936,862 to 937,338
_04175
AO356_04180: AO356_04180 - hypothetical protein, at 937,595 to 938,128
_04180
AO356_04185: AO356_04185 - transposase, at 938,197 to 938,898
_04185
AO356_04190: AO356_04190 - hypothetical protein, at 939,835 to 940,104
_04190
Position (kb) 938
939 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 937.272 kb on + strand, within AO356_04175 at 937.311 kb on + strand at 937.312 kb on - strand at 937.363 kb on - strand at 937.379 kb on - strand at 937.388 kb on + strand at 937.388 kb on + strand at 937.406 kb on + strand at 937.526 kb on + strand at 937.527 kb on - strand at 937.540 kb on - strand at 937.561 kb on + strand at 937.737 kb on - strand, within AO356_04180 at 937.974 kb on - strand, within AO356_04180 at 937.974 kb on - strand, within AO356_04180 at 938.140 kb on + strand at 938.141 kb on - strand at 938.145 kb on + strand at 938.145 kb on + strand at 938.146 kb on - strand at 938.149 kb on - strand at 938.149 kb on - strand at 938.242 kb on + strand at 938.275 kb on + strand, within AO356_04185 at 938.275 kb on + strand, within AO356_04185 at 938.276 kb on - strand, within AO356_04185 at 938.276 kb on - strand, within AO356_04185 at 938.290 kb on - strand, within AO356_04185 at 938.397 kb on + strand, within AO356_04185 at 938.398 kb on - strand, within AO356_04185 at 938.431 kb on + strand, within AO356_04185 at 938.431 kb on + strand, within AO356_04185 at 938.431 kb on + strand, within AO356_04185 at 938.432 kb on - strand, within AO356_04185 at 938.432 kb on - strand, within AO356_04185 at 938.459 kb on - strand, within AO356_04185 at 938.459 kb on - strand, within AO356_04185 at 938.472 kb on - strand, within AO356_04185 at 938.486 kb on + strand, within AO356_04185 at 938.487 kb on - strand, within AO356_04185 at 938.487 kb on - strand, within AO356_04185 at 938.487 kb on - strand, within AO356_04185 at 938.538 kb on - strand, within AO356_04185 at 938.544 kb on + strand, within AO356_04185 at 938.544 kb on + strand, within AO356_04185 at 938.558 kb on + strand, within AO356_04185 at 938.588 kb on + strand, within AO356_04185 at 938.669 kb on - strand, within AO356_04185 at 938.669 kb on - strand, within AO356_04185 at 938.705 kb on - strand, within AO356_04185 at 938.705 kb on - strand, within AO356_04185 at 938.738 kb on + strand, within AO356_04185 at 938.745 kb on - strand, within AO356_04185 at 938.745 kb on - strand, within AO356_04185 at 938.745 kb on - strand, within AO356_04185 at 938.792 kb on + strand, within AO356_04185 at 938.793 kb on - strand, within AO356_04185 at 938.801 kb on + strand, within AO356_04185 at 938.802 kb on - strand, within AO356_04185 at 938.802 kb on - strand, within AO356_04185 at 938.852 kb on - strand at 938.852 kb on - strand at 938.880 kb on + strand at 938.880 kb on + strand at 938.881 kb on - strand at 938.898 kb on + strand at 938.899 kb on - strand at 938.932 kb on - strand at 939.027 kb on + strand at 939.084 kb on - strand at 939.110 kb on - strand at 939.111 kb on + strand at 939.186 kb on - strand at 939.186 kb on - strand at 939.399 kb on - strand at 939.561 kb on + strand at 939.562 kb on - strand at 939.562 kb on - strand at 939.562 kb on - strand at 939.626 kb on + strand at 939.650 kb on - strand at 939.674 kb on + strand at 939.683 kb on - strand at 939.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM remove 937,272 + AO356_04175 0.86 +1.1 937,311 + +0.0 937,312 - +1.1 937,363 - +0.0 937,379 - +0.7 937,388 + +0.3 937,388 + +0.9 937,406 + -0.5 937,526 + +0.3 937,527 - +0.8 937,540 - +1.6 937,561 + +0.2 937,737 - AO356_04180 0.27 -0.5 937,974 - AO356_04180 0.71 -0.5 937,974 - AO356_04180 0.71 -0.6 938,140 + +1.0 938,141 - -0.6 938,145 + -0.2 938,145 + -1.6 938,146 - +1.1 938,149 - +1.8 938,149 - +0.2 938,242 + -0.1 938,275 + AO356_04185 0.11 +0.3 938,275 + AO356_04185 0.11 +0.6 938,276 - AO356_04185 0.11 +0.3 938,276 - AO356_04185 0.11 -0.9 938,290 - AO356_04185 0.13 +1.0 938,397 + AO356_04185 0.28 +1.0 938,398 - AO356_04185 0.29 +0.1 938,431 + AO356_04185 0.33 +1.1 938,431 + AO356_04185 0.33 -0.1 938,431 + AO356_04185 0.33 -0.5 938,432 - AO356_04185 0.33 -1.1 938,432 - AO356_04185 0.33 +0.9 938,459 - AO356_04185 0.37 -1.2 938,459 - AO356_04185 0.37 +0.4 938,472 - AO356_04185 0.39 +0.3 938,486 + AO356_04185 0.41 -1.7 938,487 - AO356_04185 0.41 -0.2 938,487 - AO356_04185 0.41 -0.6 938,487 - AO356_04185 0.41 -2.9 938,538 - AO356_04185 0.49 -0.9 938,544 + AO356_04185 0.49 +0.9 938,544 + AO356_04185 0.49 +0.1 938,558 + AO356_04185 0.51 +1.3 938,588 + AO356_04185 0.56 +0.5 938,669 - AO356_04185 0.67 +0.7 938,669 - AO356_04185 0.67 -1.7 938,705 - AO356_04185 0.72 +1.0 938,705 - AO356_04185 0.72 -0.5 938,738 + AO356_04185 0.77 +2.3 938,745 - AO356_04185 0.78 +0.5 938,745 - AO356_04185 0.78 +0.8 938,745 - AO356_04185 0.78 -0.9 938,792 + AO356_04185 0.85 -1.2 938,793 - AO356_04185 0.85 -1.9 938,801 + AO356_04185 0.86 +1.4 938,802 - AO356_04185 0.86 +0.3 938,802 - AO356_04185 0.86 -1.7 938,852 - -0.3 938,852 - +0.9 938,880 + +0.2 938,880 + +0.1 938,881 - -0.5 938,898 + +0.2 938,899 - -1.1 938,932 - +1.2 939,027 + +1.5 939,084 - +1.2 939,110 - +1.3 939,111 + -0.5 939,186 - -0.1 939,186 - -2.0 939,399 - +0.5 939,561 + +0.9 939,562 - -2.5 939,562 - -2.4 939,562 - -1.2 939,626 + -0.9 939,650 - -0.5 939,674 + +0.1 939,683 - +0.5 939,774 - +0.8
Or see this region's nucleotide sequence