Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03655 and AO356_03660 overlap by 4 nucleotides AO356_03660 and AO356_03665 are separated by 199 nucleotides AO356_03665 and AO356_03670 overlap by 4 nucleotides AO356_03670 and AO356_03675 are separated by 41 nucleotides
AO356_03655: AO356_03655 - heme transporter, at 815,538 to 816,206
_03655
AO356_03660: AO356_03660 - cytochrome C biogenesis protein CcmA, at 816,203 to 816,838
_03660
AO356_03665: AO356_03665 - flagellar hook-length control protein FliK, at 817,038 to 818,609
_03665
AO356_03670: AO356_03670 - flagellar biosynthesis protein FlhB, at 818,606 to 818,935
_03670
AO356_03675: AO356_03675 - hypothetical protein, at 818,977 to 819,423
_03675
Position (kb) 817
818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 816.207 kb on - strand at 816.207 kb on - strand at 816.854 kb on - strand at 816.856 kb on - strand at 816.856 kb on - strand at 816.856 kb on - strand at 816.856 kb on - strand at 816.856 kb on - strand at 816.856 kb on - strand at 816.856 kb on - strand at 816.856 kb on - strand at 816.856 kb on - strand at 816.900 kb on + strand at 816.900 kb on + strand at 816.900 kb on + strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.901 kb on - strand at 816.981 kb on + strand at 816.982 kb on - strand at 816.982 kb on - strand at 816.982 kb on - strand at 816.983 kb on + strand at 816.983 kb on + strand at 816.983 kb on + strand at 816.983 kb on + strand at 816.983 kb on + strand at 816.983 kb on + strand at 816.983 kb on + strand at 816.983 kb on + strand at 816.983 kb on + strand at 816.983 kb on + strand at 816.984 kb on - strand at 816.984 kb on - strand at 816.984 kb on - strand at 816.984 kb on - strand at 816.984 kb on - strand at 816.984 kb on - strand at 816.984 kb on - strand at 816.984 kb on - strand at 816.984 kb on - strand at 816.984 kb on - strand at 816.984 kb on - strand at 816.984 kb on - strand at 816.984 kb on - strand at 816.984 kb on - strand at 816.998 kb on - strand at 817.027 kb on + strand at 817.028 kb on - strand at 817.092 kb on - strand at 817.092 kb on - strand at 817.973 kb on + strand, within AO356_03665 at 817.974 kb on - strand, within AO356_03665 at 817.974 kb on - strand, within AO356_03665 at 818.455 kb on - strand at 818.455 kb on - strand at 818.648 kb on + strand, within AO356_03670 at 818.649 kb on - strand, within AO356_03670 at 818.649 kb on - strand, within AO356_03670 at 818.674 kb on + strand, within AO356_03670 at 818.736 kb on + strand, within AO356_03670 at 818.736 kb on + strand, within AO356_03670 at 818.736 kb on + strand, within AO356_03670 at 818.736 kb on + strand, within AO356_03670 at 818.737 kb on - strand, within AO356_03670 at 818.737 kb on - strand, within AO356_03670 at 818.745 kb on - strand, within AO356_03670 at 818.814 kb on - strand, within AO356_03670 at 818.930 kb on + strand at 818.930 kb on + strand at 818.930 kb on + strand at 818.954 kb on + strand at 819.303 kb on + strand, within AO356_03675 at 819.303 kb on + strand, within AO356_03675 at 819.304 kb on - strand, within AO356_03675
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM remove 816,207 - -1.8 816,207 - -1.5 816,854 - -0.3 816,856 - +1.6 816,856 - +0.1 816,856 - +0.6 816,856 - +0.4 816,856 - -0.8 816,856 - -1.8 816,856 - -0.4 816,856 - -0.1 816,856 - +0.5 816,900 + +0.2 816,900 + -1.5 816,900 + -2.6 816,901 - +0.8 816,901 - -0.8 816,901 - +1.5 816,901 - +1.0 816,901 - -2.4 816,901 - +0.5 816,901 - -0.4 816,901 - -1.7 816,981 + -0.4 816,982 - -1.0 816,982 - -0.2 816,982 - -1.7 816,983 + -1.8 816,983 + -1.8 816,983 + -1.9 816,983 + -1.5 816,983 + -0.7 816,983 + -0.2 816,983 + -1.9 816,983 + -0.4 816,983 + -1.9 816,983 + +0.7 816,984 - +0.5 816,984 - -1.6 816,984 - -2.4 816,984 - +0.2 816,984 - -1.8 816,984 - -1.6 816,984 - +0.6 816,984 - -0.1 816,984 - -2.6 816,984 - -0.6 816,984 - +1.6 816,984 - +0.9 816,984 - -3.1 816,984 - +1.8 816,998 - +2.1 817,027 + -1.2 817,028 - +1.0 817,092 - +2.3 817,092 - +0.0 817,973 + AO356_03665 0.59 +1.1 817,974 - AO356_03665 0.60 +1.1 817,974 - AO356_03665 0.60 -1.2 818,455 - +0.6 818,455 - +0.4 818,648 + AO356_03670 0.13 -0.3 818,649 - AO356_03670 0.13 +0.1 818,649 - AO356_03670 0.13 +0.6 818,674 + AO356_03670 0.21 -1.6 818,736 + AO356_03670 0.39 -1.5 818,736 + AO356_03670 0.39 +0.6 818,736 + AO356_03670 0.39 -1.8 818,736 + AO356_03670 0.39 +0.4 818,737 - AO356_03670 0.40 -0.1 818,737 - AO356_03670 0.40 +1.5 818,745 - AO356_03670 0.42 +3.8 818,814 - AO356_03670 0.63 +0.7 818,930 + +1.3 818,930 + +0.8 818,930 + +1.8 818,954 + +0.9 819,303 + AO356_03675 0.73 +1.4 819,303 + AO356_03675 0.73 +1.4 819,304 - AO356_03675 0.73 +1.0
Or see this region's nucleotide sequence