Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03590 and AO356_03595 overlap by 12 nucleotides AO356_03595 and AO356_03600 are separated by 151 nucleotides AO356_03600 and AO356_03605 are separated by 57 nucleotides AO356_03605 and AO356_03610 are separated by 446 nucleotides
AO356_03590: AO356_03590 - hypothetical protein, at 804,750 to 804,977
_03590
AO356_03595: AO356_03595 - carbon storage regulator, at 804,966 to 805,166
_03595
AO356_03600: AO356_03600 - putative efflux pump, required for thallium (I) resistance <small>(from data)</small>, at 805,318 to 805,650
_03600
AO356_03605: AO356_03605 - short-chain dehydrogenase, at 805,708 to 806,523
_03605
AO356_03610: AO356_03610 - hypothetical protein, at 806,970 to 809,063
_03610
Position (kb) 805
806
807 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 804.736 kb on - strand at 804.744 kb on + strand at 804.744 kb on + strand at 804.967 kb on + strand at 804.967 kb on + strand at 804.967 kb on + strand at 804.967 kb on + strand at 804.967 kb on + strand at 804.968 kb on - strand at 804.968 kb on - strand at 805.115 kb on + strand, within AO356_03595 at 805.116 kb on - strand, within AO356_03595 at 805.156 kb on - strand at 805.158 kb on + strand at 805.159 kb on - strand at 805.159 kb on - strand at 805.159 kb on - strand at 805.179 kb on + strand at 805.180 kb on - strand at 805.254 kb on + strand at 805.255 kb on - strand at 805.309 kb on + strand at 805.310 kb on - strand at 805.310 kb on - strand at 805.310 kb on - strand at 805.310 kb on - strand at 805.314 kb on + strand at 805.315 kb on - strand at 805.346 kb on - strand at 805.346 kb on - strand at 805.449 kb on + strand, within AO356_03600 at 805.449 kb on + strand, within AO356_03600 at 805.449 kb on + strand, within AO356_03600 at 805.449 kb on + strand, within AO356_03600 at 805.449 kb on + strand, within AO356_03600 at 805.450 kb on - strand, within AO356_03600 at 805.450 kb on - strand, within AO356_03600 at 805.450 kb on - strand, within AO356_03600 at 805.450 kb on - strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.451 kb on + strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.452 kb on - strand, within AO356_03600 at 805.487 kb on + strand, within AO356_03600 at 805.487 kb on + strand, within AO356_03600 at 805.595 kb on + strand, within AO356_03600 at 805.596 kb on - strand, within AO356_03600 at 805.596 kb on - strand, within AO356_03600 at 805.596 kb on - strand, within AO356_03600 at 805.596 kb on - strand, within AO356_03600 at 805.640 kb on + strand at 805.640 kb on + strand at 805.640 kb on + strand at 805.640 kb on + strand at 805.640 kb on + strand at 805.641 kb on - strand at 805.641 kb on - strand at 805.641 kb on - strand at 805.862 kb on + strand, within AO356_03605 at 805.862 kb on + strand, within AO356_03605 at 805.862 kb on + strand, within AO356_03605 at 805.863 kb on - strand, within AO356_03605 at 805.863 kb on - strand, within AO356_03605 at 805.863 kb on - strand, within AO356_03605 at 805.868 kb on + strand, within AO356_03605 at 805.868 kb on + strand, within AO356_03605 at 805.868 kb on + strand, within AO356_03605 at 805.869 kb on - strand, within AO356_03605 at 805.869 kb on - strand, within AO356_03605 at 805.869 kb on - strand, within AO356_03605 at 805.869 kb on - strand, within AO356_03605 at 805.999 kb on + strand, within AO356_03605 at 806.000 kb on - strand, within AO356_03605 at 806.075 kb on + strand, within AO356_03605 at 806.075 kb on + strand, within AO356_03605 at 806.075 kb on + strand, within AO356_03605 at 806.076 kb on - strand, within AO356_03605 at 806.076 kb on - strand, within AO356_03605 at 806.076 kb on - strand, within AO356_03605 at 806.336 kb on + strand, within AO356_03605 at 806.336 kb on + strand, within AO356_03605 at 806.337 kb on - strand, within AO356_03605 at 806.337 kb on - strand, within AO356_03605 at 806.523 kb on + strand at 806.523 kb on + strand at 806.550 kb on + strand at 806.550 kb on + strand at 806.550 kb on + strand at 806.550 kb on + strand at 806.561 kb on + strand at 806.561 kb on + strand at 806.561 kb on + strand at 806.670 kb on + strand at 806.671 kb on - strand at 806.671 kb on - strand at 806.673 kb on + strand at 806.673 kb on + strand at 806.674 kb on - strand at 806.674 kb on - strand at 806.688 kb on + strand at 806.689 kb on - strand at 806.705 kb on + strand at 806.705 kb on + strand at 806.705 kb on + strand at 806.705 kb on + strand at 806.706 kb on - strand at 806.716 kb on + strand at 806.717 kb on - strand at 806.717 kb on - strand at 806.717 kb on - strand at 806.740 kb on - strand at 806.764 kb on + strand at 806.764 kb on + strand at 806.764 kb on + strand at 806.764 kb on + strand at 806.764 kb on + strand at 806.765 kb on - strand at 806.765 kb on - strand at 806.768 kb on + strand at 806.768 kb on + strand at 806.768 kb on + strand at 806.768 kb on + strand at 806.768 kb on + strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.769 kb on - strand at 806.860 kb on + strand at 806.860 kb on + strand at 806.860 kb on + strand at 806.861 kb on - strand at 806.861 kb on - strand at 806.861 kb on - strand at 806.887 kb on + strand at 806.890 kb on + strand at 806.890 kb on + strand at 806.891 kb on - strand at 806.902 kb on + strand at 806.902 kb on + strand at 806.902 kb on + strand at 806.902 kb on + strand at 806.902 kb on + strand at 806.902 kb on + strand at 806.903 kb on - strand at 806.904 kb on + strand at 806.904 kb on + strand at 806.904 kb on + strand at 806.904 kb on + strand at 806.904 kb on + strand at 806.904 kb on + strand at 806.905 kb on - strand at 806.905 kb on - strand at 806.905 kb on - strand at 806.912 kb on + strand at 806.913 kb on - strand at 806.917 kb on - strand at 806.917 kb on - strand at 806.917 kb on - strand at 806.940 kb on + strand at 806.968 kb on + strand at 807.124 kb on + strand at 807.125 kb on - strand at 807.283 kb on - strand, within AO356_03610 at 807.487 kb on + strand, within AO356_03610 at 807.487 kb on + strand, within AO356_03610 at 807.487 kb on + strand, within AO356_03610 at 807.487 kb on + strand, within AO356_03610 at 807.487 kb on + strand, within AO356_03610 at 807.487 kb on + strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610 at 807.488 kb on - strand, within AO356_03610
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM remove 804,736 - +0.3 804,744 + -0.6 804,744 + +1.3 804,967 + -0.3 804,967 + +0.4 804,967 + +0.4 804,967 + -0.6 804,967 + -2.7 804,968 - +0.0 804,968 - +2.9 805,115 + AO356_03595 0.74 -0.4 805,116 - AO356_03595 0.75 -1.4 805,156 - -0.7 805,158 + +0.6 805,159 - +0.5 805,159 - -2.2 805,159 - -1.4 805,179 + -0.2 805,180 - +0.1 805,254 + -1.0 805,255 - -0.8 805,309 + +0.5 805,310 - -0.7 805,310 - +0.8 805,310 - +0.8 805,310 - +0.4 805,314 + -0.1 805,315 - -0.3 805,346 - +1.2 805,346 - +0.9 805,449 + AO356_03600 0.39 +0.0 805,449 + AO356_03600 0.39 -1.0 805,449 + AO356_03600 0.39 +0.8 805,449 + AO356_03600 0.39 +0.1 805,449 + AO356_03600 0.39 -1.7 805,450 - AO356_03600 0.40 +1.1 805,450 - AO356_03600 0.40 -0.2 805,450 - AO356_03600 0.40 +1.0 805,450 - AO356_03600 0.40 -0.9 805,451 + AO356_03600 0.40 -1.5 805,451 + AO356_03600 0.40 +0.7 805,451 + AO356_03600 0.40 +1.4 805,451 + AO356_03600 0.40 +1.0 805,451 + AO356_03600 0.40 +0.3 805,451 + AO356_03600 0.40 +0.4 805,451 + AO356_03600 0.40 -1.4 805,451 + AO356_03600 0.40 -0.9 805,451 + AO356_03600 0.40 +0.1 805,451 + AO356_03600 0.40 -0.8 805,451 + AO356_03600 0.40 -1.2 805,452 - AO356_03600 0.40 -0.2 805,452 - AO356_03600 0.40 +0.3 805,452 - AO356_03600 0.40 +1.4 805,452 - AO356_03600 0.40 +0.4 805,452 - AO356_03600 0.40 -0.1 805,452 - AO356_03600 0.40 +1.5 805,452 - AO356_03600 0.40 -0.7 805,452 - AO356_03600 0.40 +0.1 805,452 - AO356_03600 0.40 -0.5 805,487 + AO356_03600 0.51 -1.0 805,487 + AO356_03600 0.51 -0.2 805,595 + AO356_03600 0.83 +0.8 805,596 - AO356_03600 0.83 +1.1 805,596 - AO356_03600 0.83 -2.6 805,596 - AO356_03600 0.83 -1.3 805,596 - AO356_03600 0.83 +0.5 805,640 + +1.0 805,640 + +2.7 805,640 + -0.3 805,640 + -0.3 805,640 + -0.2 805,641 - +1.7 805,641 - -1.0 805,641 - -1.6 805,862 + AO356_03605 0.19 +0.4 805,862 + AO356_03605 0.19 +1.2 805,862 + AO356_03605 0.19 +0.5 805,863 - AO356_03605 0.19 +0.2 805,863 - AO356_03605 0.19 -2.4 805,863 - AO356_03605 0.19 +0.0 805,868 + AO356_03605 0.20 +1.0 805,868 + AO356_03605 0.20 -0.7 805,868 + AO356_03605 0.20 +0.5 805,869 - AO356_03605 0.20 +1.1 805,869 - AO356_03605 0.20 -0.2 805,869 - AO356_03605 0.20 +0.2 805,869 - AO356_03605 0.20 -0.7 805,999 + AO356_03605 0.36 +1.3 806,000 - AO356_03605 0.36 -0.4 806,075 + AO356_03605 0.45 +0.1 806,075 + AO356_03605 0.45 +0.5 806,075 + AO356_03605 0.45 -1.9 806,076 - AO356_03605 0.45 +0.5 806,076 - AO356_03605 0.45 -0.5 806,076 - AO356_03605 0.45 +0.2 806,336 + AO356_03605 0.77 -2.5 806,336 + AO356_03605 0.77 +0.9 806,337 - AO356_03605 0.77 -0.6 806,337 - AO356_03605 0.77 -2.9 806,523 + -0.1 806,523 + +0.7 806,550 + +0.4 806,550 + +0.1 806,550 + -0.2 806,550 + +0.6 806,561 + +0.8 806,561 + -0.4 806,561 + -1.9 806,670 + -2.8 806,671 - -0.3 806,671 - -1.3 806,673 + -0.3 806,673 + -1.1 806,674 - -0.6 806,674 - -0.6 806,688 + -0.5 806,689 - -0.9 806,705 + -2.2 806,705 + -2.0 806,705 + -2.9 806,705 + -1.2 806,706 - +0.4 806,716 + +0.3 806,717 - -1.5 806,717 - -0.8 806,717 - -0.2 806,740 - -2.8 806,764 + +1.8 806,764 + -0.1 806,764 + +0.4 806,764 + -0.7 806,764 + -0.4 806,765 - +1.0 806,765 - +1.0 806,768 + -0.7 806,768 + +0.4 806,768 + -2.2 806,768 + -0.2 806,768 + -0.4 806,769 - -1.8 806,769 - -0.9 806,769 - -1.0 806,769 - -0.8 806,769 - -1.2 806,769 - +0.2 806,769 - +0.8 806,769 - +0.0 806,769 - -1.3 806,860 + +0.1 806,860 + -2.7 806,860 + -1.2 806,861 - -0.5 806,861 - +0.3 806,861 - +0.3 806,887 + +1.8 806,890 + +1.0 806,890 + -0.3 806,891 - -0.5 806,902 + -2.0 806,902 + -0.6 806,902 + -0.3 806,902 + -1.1 806,902 + -1.1 806,902 + +0.3 806,903 - -2.3 806,904 + +0.2 806,904 + +1.3 806,904 + +1.4 806,904 + +1.2 806,904 + -0.5 806,904 + +0.1 806,905 - +0.3 806,905 - -2.4 806,905 - +1.0 806,912 + -2.6 806,913 - +1.5 806,917 - -0.9 806,917 - -0.3 806,917 - +0.8 806,940 + -1.7 806,968 + -1.1 807,124 + +0.6 807,125 - +1.2 807,283 - AO356_03610 0.15 -1.2 807,487 + AO356_03610 0.25 +0.6 807,487 + AO356_03610 0.25 -1.7 807,487 + AO356_03610 0.25 -1.2 807,487 + AO356_03610 0.25 -0.9 807,487 + AO356_03610 0.25 +0.1 807,487 + AO356_03610 0.25 +2.4 807,488 - AO356_03610 0.25 -0.2 807,488 - AO356_03610 0.25 +1.0 807,488 - AO356_03610 0.25 +0.6 807,488 - AO356_03610 0.25 -0.8 807,488 - AO356_03610 0.25 -0.2 807,488 - AO356_03610 0.25 +1.1 807,488 - AO356_03610 0.25 +1.2 807,488 - AO356_03610 0.25 -0.9 807,488 - AO356_03610 0.25 -1.4
Or see this region's nucleotide sequence