Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03590

Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03585 and AO356_03590 are separated by 181 nucleotidesAO356_03590 and AO356_03595 overlap by 12 nucleotidesAO356_03595 and AO356_03600 are separated by 151 nucleotidesAO356_03600 and AO356_03605 are separated by 57 nucleotides AO356_03585: AO356_03585 - peptidase M42, at 803,378 to 804,568 _03585 AO356_03590: AO356_03590 - hypothetical protein, at 804,750 to 804,977 _03590 AO356_03595: AO356_03595 - carbon storage regulator, at 804,966 to 805,166 _03595 AO356_03600: AO356_03600 - putative efflux pump, required for thallium (I) resistance (from data), at 805,318 to 805,650 _03600 AO356_03605: AO356_03605 - short-chain dehydrogenase, at 805,708 to 806,523 _03605 Position (kb) 804 805Strain fitness (log2 ratio) -2 -1 0 1 2 3at 803.885 kb on + strand, within AO356_03585at 803.885 kb on + strand, within AO356_03585at 803.886 kb on - strand, within AO356_03585at 804.192 kb on - strand, within AO356_03585at 804.192 kb on - strand, within AO356_03585at 804.198 kb on - strand, within AO356_03585at 804.198 kb on - strand, within AO356_03585at 804.198 kb on - strand, within AO356_03585at 804.243 kb on + strand, within AO356_03585at 804.243 kb on + strand, within AO356_03585at 804.244 kb on - strand, within AO356_03585at 804.244 kb on - strand, within AO356_03585at 804.244 kb on - strand, within AO356_03585at 804.269 kb on + strand, within AO356_03585at 804.269 kb on + strand, within AO356_03585at 804.269 kb on + strand, within AO356_03585at 804.272 kb on + strand, within AO356_03585at 804.272 kb on + strand, within AO356_03585at 804.272 kb on + strand, within AO356_03585at 804.273 kb on - strand, within AO356_03585at 804.273 kb on - strand, within AO356_03585at 804.273 kb on - strand, within AO356_03585at 804.359 kb on + strand, within AO356_03585at 804.413 kb on + strand, within AO356_03585at 804.413 kb on + strand, within AO356_03585at 804.414 kb on - strand, within AO356_03585at 804.414 kb on - strand, within AO356_03585at 804.736 kb on - strandat 804.744 kb on + strandat 804.744 kb on + strandat 804.967 kb on + strandat 804.967 kb on + strandat 804.967 kb on + strandat 804.967 kb on + strandat 804.967 kb on + strandat 804.968 kb on - strandat 804.968 kb on - strandat 805.115 kb on + strand, within AO356_03595at 805.116 kb on - strand, within AO356_03595at 805.156 kb on - strandat 805.158 kb on + strandat 805.159 kb on - strandat 805.159 kb on - strandat 805.159 kb on - strandat 805.179 kb on + strandat 805.180 kb on - strandat 805.254 kb on + strandat 805.255 kb on - strandat 805.309 kb on + strandat 805.310 kb on - strandat 805.310 kb on - strandat 805.310 kb on - strandat 805.310 kb on - strandat 805.314 kb on + strandat 805.315 kb on - strandat 805.346 kb on - strandat 805.346 kb on - strandat 805.449 kb on + strand, within AO356_03600at 805.449 kb on + strand, within AO356_03600at 805.449 kb on + strand, within AO356_03600at 805.449 kb on + strand, within AO356_03600at 805.449 kb on + strand, within AO356_03600at 805.450 kb on - strand, within AO356_03600at 805.450 kb on - strand, within AO356_03600at 805.450 kb on - strand, within AO356_03600at 805.450 kb on - strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.451 kb on + strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.452 kb on - strand, within AO356_03600at 805.487 kb on + strand, within AO356_03600at 805.487 kb on + strand, within AO356_03600at 805.595 kb on + strand, within AO356_03600at 805.596 kb on - strand, within AO356_03600at 805.596 kb on - strand, within AO356_03600at 805.596 kb on - strand, within AO356_03600at 805.596 kb on - strand, within AO356_03600at 805.640 kb on + strandat 805.640 kb on + strandat 805.640 kb on + strandat 805.640 kb on + strandat 805.640 kb on + strandat 805.641 kb on - strandat 805.641 kb on - strandat 805.641 kb on - strandat 805.862 kb on + strand, within AO356_03605at 805.862 kb on + strand, within AO356_03605at 805.862 kb on + strand, within AO356_03605at 805.863 kb on - strand, within AO356_03605at 805.863 kb on - strand, within AO356_03605at 805.863 kb on - strand, within AO356_03605at 805.868 kb on + strand, within AO356_03605at 805.868 kb on + strand, within AO356_03605at 805.868 kb on + strand, within AO356_03605at 805.869 kb on - strand, within AO356_03605at 805.869 kb on - strand, within AO356_03605at 805.869 kb on - strand, within AO356_03605at 805.869 kb on - strand, within AO356_03605

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM
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803,885 + AO356_03585 0.43 -0.6
803,885 + AO356_03585 0.43 +0.4
803,886 - AO356_03585 0.43 -1.2
804,192 - AO356_03585 0.68 +0.4
804,192 - AO356_03585 0.68 -1.9
804,198 - AO356_03585 0.69 +0.2
804,198 - AO356_03585 0.69 +0.5
804,198 - AO356_03585 0.69 -0.4
804,243 + AO356_03585 0.73 -0.6
804,243 + AO356_03585 0.73 -1.6
804,244 - AO356_03585 0.73 +0.3
804,244 - AO356_03585 0.73 +0.3
804,244 - AO356_03585 0.73 -0.5
804,269 + AO356_03585 0.75 +1.0
804,269 + AO356_03585 0.75 +1.7
804,269 + AO356_03585 0.75 +1.1
804,272 + AO356_03585 0.75 -0.5
804,272 + AO356_03585 0.75 +0.2
804,272 + AO356_03585 0.75 -0.4
804,273 - AO356_03585 0.75 +1.1
804,273 - AO356_03585 0.75 -0.1
804,273 - AO356_03585 0.75 +0.4
804,359 + AO356_03585 0.82 -1.1
804,413 + AO356_03585 0.87 -1.6
804,413 + AO356_03585 0.87 +0.4
804,414 - AO356_03585 0.87 +0.4
804,414 - AO356_03585 0.87 +0.6
804,736 - +0.3
804,744 + -0.6
804,744 + +1.3
804,967 + -0.3
804,967 + +0.4
804,967 + +0.4
804,967 + -0.6
804,967 + -2.7
804,968 - +0.0
804,968 - +2.9
805,115 + AO356_03595 0.74 -0.4
805,116 - AO356_03595 0.75 -1.4
805,156 - -0.7
805,158 + +0.6
805,159 - +0.5
805,159 - -2.2
805,159 - -1.4
805,179 + -0.2
805,180 - +0.1
805,254 + -1.0
805,255 - -0.8
805,309 + +0.5
805,310 - -0.7
805,310 - +0.8
805,310 - +0.8
805,310 - +0.4
805,314 + -0.1
805,315 - -0.3
805,346 - +1.2
805,346 - +0.9
805,449 + AO356_03600 0.39 +0.0
805,449 + AO356_03600 0.39 -1.0
805,449 + AO356_03600 0.39 +0.8
805,449 + AO356_03600 0.39 +0.1
805,449 + AO356_03600 0.39 -1.7
805,450 - AO356_03600 0.40 +1.1
805,450 - AO356_03600 0.40 -0.2
805,450 - AO356_03600 0.40 +1.0
805,450 - AO356_03600 0.40 -0.9
805,451 + AO356_03600 0.40 -1.5
805,451 + AO356_03600 0.40 +0.7
805,451 + AO356_03600 0.40 +1.4
805,451 + AO356_03600 0.40 +1.0
805,451 + AO356_03600 0.40 +0.3
805,451 + AO356_03600 0.40 +0.4
805,451 + AO356_03600 0.40 -1.4
805,451 + AO356_03600 0.40 -0.9
805,451 + AO356_03600 0.40 +0.1
805,451 + AO356_03600 0.40 -0.8
805,451 + AO356_03600 0.40 -1.2
805,452 - AO356_03600 0.40 -0.2
805,452 - AO356_03600 0.40 +0.3
805,452 - AO356_03600 0.40 +1.4
805,452 - AO356_03600 0.40 +0.4
805,452 - AO356_03600 0.40 -0.1
805,452 - AO356_03600 0.40 +1.5
805,452 - AO356_03600 0.40 -0.7
805,452 - AO356_03600 0.40 +0.1
805,452 - AO356_03600 0.40 -0.5
805,487 + AO356_03600 0.51 -1.0
805,487 + AO356_03600 0.51 -0.2
805,595 + AO356_03600 0.83 +0.8
805,596 - AO356_03600 0.83 +1.1
805,596 - AO356_03600 0.83 -2.6
805,596 - AO356_03600 0.83 -1.3
805,596 - AO356_03600 0.83 +0.5
805,640 + +1.0
805,640 + +2.7
805,640 + -0.3
805,640 + -0.3
805,640 + -0.2
805,641 - +1.7
805,641 - -1.0
805,641 - -1.6
805,862 + AO356_03605 0.19 +0.4
805,862 + AO356_03605 0.19 +1.2
805,862 + AO356_03605 0.19 +0.5
805,863 - AO356_03605 0.19 +0.2
805,863 - AO356_03605 0.19 -2.4
805,863 - AO356_03605 0.19 +0.0
805,868 + AO356_03605 0.20 +1.0
805,868 + AO356_03605 0.20 -0.7
805,868 + AO356_03605 0.20 +0.5
805,869 - AO356_03605 0.20 +1.1
805,869 - AO356_03605 0.20 -0.2
805,869 - AO356_03605 0.20 +0.2
805,869 - AO356_03605 0.20 -0.7

Or see this region's nucleotide sequence