Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03320

Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03315 and AO356_03320 are separated by 494 nucleotidesAO356_03320 and AO356_03325 are separated by 471 nucleotides AO356_03315: AO356_03315 - ATPase, at 736,082 to 737,776 _03315 AO356_03320: AO356_03320 - ethanolamine permease, at 738,271 to 739,635 _03320 AO356_03325: AO356_03325 - hypothetical protein, at 740,107 to 740,958 _03325 Position (kb) 738 739 740Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 737.273 kb on - strand, within AO356_03315at 737.388 kb on + strand, within AO356_03315at 737.388 kb on + strand, within AO356_03315at 737.389 kb on - strand, within AO356_03315at 737.389 kb on - strand, within AO356_03315at 737.412 kb on + strand, within AO356_03315at 737.413 kb on - strand, within AO356_03315at 737.452 kb on + strand, within AO356_03315at 737.494 kb on + strand, within AO356_03315at 737.580 kb on + strand, within AO356_03315at 737.580 kb on + strand, within AO356_03315at 737.580 kb on + strand, within AO356_03315at 737.580 kb on + strand, within AO356_03315at 737.580 kb on + strand, within AO356_03315at 737.580 kb on + strand, within AO356_03315at 737.581 kb on - strand, within AO356_03315at 737.581 kb on - strand, within AO356_03315at 737.581 kb on - strand, within AO356_03315at 737.581 kb on - strand, within AO356_03315at 737.698 kb on - strandat 737.698 kb on - strandat 737.767 kb on - strandat 737.786 kb on + strandat 737.786 kb on + strandat 737.786 kb on + strandat 737.787 kb on - strandat 737.822 kb on + strandat 737.822 kb on + strandat 737.822 kb on + strandat 737.823 kb on - strandat 737.823 kb on - strandat 737.823 kb on - strandat 737.891 kb on - strandat 737.891 kb on - strandat 737.936 kb on - strandat 737.969 kb on - strandat 738.187 kb on + strandat 738.187 kb on + strandat 738.191 kb on - strandat 738.191 kb on - strandat 738.250 kb on - strandat 738.364 kb on + strandat 738.427 kb on + strand, within AO356_03320at 738.427 kb on + strand, within AO356_03320at 738.427 kb on + strand, within AO356_03320at 738.427 kb on + strand, within AO356_03320at 738.427 kb on + strand, within AO356_03320at 738.428 kb on - strand, within AO356_03320at 738.428 kb on - strand, within AO356_03320at 738.428 kb on - strand, within AO356_03320at 738.428 kb on - strand, within AO356_03320at 738.428 kb on - strand, within AO356_03320at 738.428 kb on - strand, within AO356_03320at 738.428 kb on - strand, within AO356_03320at 738.428 kb on - strand, within AO356_03320at 738.428 kb on - strand, within AO356_03320at 738.428 kb on - strand, within AO356_03320at 738.428 kb on - strand, within AO356_03320at 738.496 kb on + strand, within AO356_03320at 738.496 kb on + strand, within AO356_03320at 738.656 kb on - strand, within AO356_03320at 738.656 kb on - strand, within AO356_03320at 738.656 kb on - strand, within AO356_03320at 738.656 kb on - strand, within AO356_03320at 738.656 kb on - strand, within AO356_03320at 738.657 kb on + strand, within AO356_03320at 738.658 kb on - strand, within AO356_03320at 738.658 kb on - strand, within AO356_03320at 738.746 kb on + strand, within AO356_03320at 738.746 kb on + strand, within AO356_03320at 738.746 kb on + strand, within AO356_03320at 738.746 kb on + strand, within AO356_03320at 738.746 kb on + strand, within AO356_03320at 738.746 kb on + strand, within AO356_03320at 738.747 kb on - strand, within AO356_03320at 738.747 kb on - strand, within AO356_03320at 738.747 kb on - strand, within AO356_03320at 738.952 kb on + strand, within AO356_03320at 738.953 kb on - strand, within AO356_03320at 738.953 kb on - strand, within AO356_03320at 738.953 kb on - strand, within AO356_03320at 739.166 kb on - strand, within AO356_03320at 739.291 kb on + strand, within AO356_03320at 739.291 kb on + strand, within AO356_03320at 739.375 kb on + strand, within AO356_03320at 739.375 kb on + strand, within AO356_03320at 739.375 kb on + strand, within AO356_03320at 739.375 kb on + strand, within AO356_03320at 739.375 kb on + strand, within AO356_03320at 739.375 kb on + strand, within AO356_03320at 739.376 kb on - strand, within AO356_03320at 739.376 kb on - strand, within AO356_03320at 739.376 kb on - strand, within AO356_03320at 739.376 kb on - strand, within AO356_03320at 739.376 kb on - strand, within AO356_03320at 739.376 kb on - strand, within AO356_03320at 739.376 kb on - strand, within AO356_03320at 739.434 kb on + strand, within AO356_03320at 739.434 kb on + strand, within AO356_03320at 739.434 kb on + strand, within AO356_03320at 739.434 kb on + strand, within AO356_03320at 739.435 kb on - strand, within AO356_03320at 739.570 kb on + strandat 739.570 kb on + strandat 739.571 kb on - strandat 739.658 kb on + strandat 739.659 kb on - strandat 739.659 kb on - strandat 739.661 kb on + strandat 739.661 kb on + strandat 739.662 kb on - strandat 739.662 kb on - strandat 739.662 kb on - strandat 739.662 kb on - strandat 739.691 kb on + strandat 739.691 kb on + strandat 739.692 kb on - strandat 739.692 kb on - strandat 739.698 kb on + strandat 739.698 kb on + strandat 739.699 kb on - strandat 739.699 kb on - strandat 739.699 kb on - strandat 739.754 kb on + strandat 739.754 kb on + strandat 739.755 kb on - strandat 739.764 kb on + strandat 739.764 kb on + strandat 739.765 kb on - strandat 739.765 kb on - strandat 739.782 kb on - strandat 739.995 kb on - strandat 740.108 kb on + strandat 740.108 kb on + strandat 740.108 kb on + strandat 740.108 kb on + strandat 740.109 kb on - strandat 740.109 kb on - strandat 740.156 kb on + strandat 740.210 kb on + strand, within AO356_03325at 740.210 kb on + strand, within AO356_03325at 740.211 kb on - strand, within AO356_03325at 740.211 kb on - strand, within AO356_03325at 740.211 kb on - strand, within AO356_03325at 740.211 kb on - strand, within AO356_03325at 740.211 kb on - strand, within AO356_03325at 740.345 kb on + strand, within AO356_03325at 740.345 kb on + strand, within AO356_03325at 740.345 kb on + strand, within AO356_03325at 740.345 kb on + strand, within AO356_03325at 740.346 kb on - strand, within AO356_03325at 740.346 kb on - strand, within AO356_03325at 740.381 kb on + strand, within AO356_03325at 740.381 kb on + strand, within AO356_03325at 740.381 kb on + strand, within AO356_03325at 740.381 kb on + strand, within AO356_03325at 740.381 kb on + strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.382 kb on - strand, within AO356_03325at 740.418 kb on + strand, within AO356_03325at 740.419 kb on - strand, within AO356_03325at 740.419 kb on - strand, within AO356_03325at 740.419 kb on - strand, within AO356_03325at 740.425 kb on + strand, within AO356_03325at 740.425 kb on + strand, within AO356_03325at 740.531 kb on + strand, within AO356_03325at 740.531 kb on + strand, within AO356_03325at 740.531 kb on + strand, within AO356_03325at 740.532 kb on - strand, within AO356_03325at 740.532 kb on - strand, within AO356_03325at 740.592 kb on - strand, within AO356_03325

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM
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737,273 - AO356_03315 0.70 +0.6
737,388 + AO356_03315 0.77 -0.4
737,388 + AO356_03315 0.77 +2.4
737,389 - AO356_03315 0.77 +0.2
737,389 - AO356_03315 0.77 -1.9
737,412 + AO356_03315 0.78 +1.0
737,413 - AO356_03315 0.79 -0.9
737,452 + AO356_03315 0.81 +0.6
737,494 + AO356_03315 0.83 +0.0
737,580 + AO356_03315 0.88 -0.4
737,580 + AO356_03315 0.88 +1.1
737,580 + AO356_03315 0.88 +2.7
737,580 + AO356_03315 0.88 +1.6
737,580 + AO356_03315 0.88 -1.4
737,580 + AO356_03315 0.88 +0.9
737,581 - AO356_03315 0.88 -0.4
737,581 - AO356_03315 0.88 +1.7
737,581 - AO356_03315 0.88 +0.6
737,581 - AO356_03315 0.88 -1.7
737,698 - +1.8
737,698 - -0.7
737,767 - +2.4
737,786 + +0.8
737,786 + -0.3
737,786 + +0.0
737,787 - -3.1
737,822 + -0.0
737,822 + +1.4
737,822 + +1.3
737,823 - -0.2
737,823 - +0.0
737,823 - +1.2
737,891 - +0.9
737,891 - -1.2
737,936 - +1.2
737,969 - -0.8
738,187 + +1.4
738,187 + -0.2
738,191 - -2.1
738,191 - +0.1
738,250 - -0.0
738,364 + +2.8
738,427 + AO356_03320 0.11 -3.1
738,427 + AO356_03320 0.11 -0.8
738,427 + AO356_03320 0.11 -0.2
738,427 + AO356_03320 0.11 +0.2
738,427 + AO356_03320 0.11 -1.5
738,428 - AO356_03320 0.12 -2.8
738,428 - AO356_03320 0.12 +1.4
738,428 - AO356_03320 0.12 -0.2
738,428 - AO356_03320 0.12 +0.6
738,428 - AO356_03320 0.12 -0.1
738,428 - AO356_03320 0.12 +3.1
738,428 - AO356_03320 0.12 -0.8
738,428 - AO356_03320 0.12 -0.7
738,428 - AO356_03320 0.12 +1.7
738,428 - AO356_03320 0.12 -0.5
738,428 - AO356_03320 0.12 -1.9
738,496 + AO356_03320 0.16 -2.4
738,496 + AO356_03320 0.16 +1.4
738,656 - AO356_03320 0.28 -0.1
738,656 - AO356_03320 0.28 -0.7
738,656 - AO356_03320 0.28 +0.9
738,656 - AO356_03320 0.28 +0.2
738,656 - AO356_03320 0.28 -1.2
738,657 + AO356_03320 0.28 -0.3
738,658 - AO356_03320 0.28 +0.0
738,658 - AO356_03320 0.28 +0.1
738,746 + AO356_03320 0.35 -0.7
738,746 + AO356_03320 0.35 -0.1
738,746 + AO356_03320 0.35 +0.5
738,746 + AO356_03320 0.35 -2.7
738,746 + AO356_03320 0.35 -0.8
738,746 + AO356_03320 0.35 -1.4
738,747 - AO356_03320 0.35 -0.3
738,747 - AO356_03320 0.35 -0.3
738,747 - AO356_03320 0.35 -2.0
738,952 + AO356_03320 0.50 +0.8
738,953 - AO356_03320 0.50 +0.5
738,953 - AO356_03320 0.50 +0.1
738,953 - AO356_03320 0.50 -1.1
739,166 - AO356_03320 0.66 +0.7
739,291 + AO356_03320 0.75 +0.6
739,291 + AO356_03320 0.75 +0.3
739,375 + AO356_03320 0.81 +1.1
739,375 + AO356_03320 0.81 +0.2
739,375 + AO356_03320 0.81 +0.8
739,375 + AO356_03320 0.81 -1.2
739,375 + AO356_03320 0.81 -0.9
739,375 + AO356_03320 0.81 +1.3
739,376 - AO356_03320 0.81 +1.7
739,376 - AO356_03320 0.81 -2.2
739,376 - AO356_03320 0.81 -2.2
739,376 - AO356_03320 0.81 -0.0
739,376 - AO356_03320 0.81 -0.2
739,376 - AO356_03320 0.81 -0.6
739,376 - AO356_03320 0.81 +1.1
739,434 + AO356_03320 0.85 -0.0
739,434 + AO356_03320 0.85 -1.3
739,434 + AO356_03320 0.85 +0.7
739,434 + AO356_03320 0.85 -0.4
739,435 - AO356_03320 0.85 -0.5
739,570 + +2.1
739,570 + -0.4
739,571 - +0.1
739,658 + +0.8
739,659 - +1.4
739,659 - -0.1
739,661 + +0.8
739,661 + -1.9
739,662 - +1.6
739,662 - -1.9
739,662 - +0.5
739,662 - +1.8
739,691 + -0.6
739,691 + -0.1
739,692 - -0.2
739,692 - -0.4
739,698 + +0.7
739,698 + -1.1
739,699 - +0.9
739,699 - -0.4
739,699 - -0.3
739,754 + +0.5
739,754 + +0.0
739,755 - +1.2
739,764 + -3.1
739,764 + -2.7
739,765 - +0.8
739,765 - +0.1
739,782 - -1.9
739,995 - +0.4
740,108 + -0.7
740,108 + +1.8
740,108 + +2.8
740,108 + +0.7
740,109 - -0.6
740,109 - -0.4
740,156 + +0.9
740,210 + AO356_03325 0.12 +0.4
740,210 + AO356_03325 0.12 +0.6
740,211 - AO356_03325 0.12 +0.4
740,211 - AO356_03325 0.12 -1.1
740,211 - AO356_03325 0.12 -0.4
740,211 - AO356_03325 0.12 -0.9
740,211 - AO356_03325 0.12 +0.4
740,345 + AO356_03325 0.28 +1.1
740,345 + AO356_03325 0.28 -0.1
740,345 + AO356_03325 0.28 +0.6
740,345 + AO356_03325 0.28 +0.2
740,346 - AO356_03325 0.28 -0.6
740,346 - AO356_03325 0.28 +0.1
740,381 + AO356_03325 0.32 +2.1
740,381 + AO356_03325 0.32 -2.8
740,381 + AO356_03325 0.32 -0.2
740,381 + AO356_03325 0.32 -0.4
740,381 + AO356_03325 0.32 -0.1
740,382 - AO356_03325 0.32 +0.8
740,382 - AO356_03325 0.32 -0.0
740,382 - AO356_03325 0.32 -0.4
740,382 - AO356_03325 0.32 +0.7
740,382 - AO356_03325 0.32 +0.8
740,382 - AO356_03325 0.32 +1.2
740,382 - AO356_03325 0.32 -0.8
740,382 - AO356_03325 0.32 +0.3
740,382 - AO356_03325 0.32 -1.0
740,382 - AO356_03325 0.32 -0.6
740,418 + AO356_03325 0.37 -2.1
740,419 - AO356_03325 0.37 +0.1
740,419 - AO356_03325 0.37 +0.4
740,419 - AO356_03325 0.37 -1.1
740,425 + AO356_03325 0.37 +1.4
740,425 + AO356_03325 0.37 -0.6
740,531 + AO356_03325 0.50 -1.7
740,531 + AO356_03325 0.50 +1.6
740,531 + AO356_03325 0.50 +0.5
740,532 - AO356_03325 0.50 +0.1
740,532 - AO356_03325 0.50 +2.0
740,592 - AO356_03325 0.57 +0.4

Or see this region's nucleotide sequence