Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03210 and AO356_03215 are separated by 123 nucleotides AO356_03215 and AO356_03220 are separated by 252 nucleotides AO356_03220 and AO356_03225 are separated by 56 nucleotides
AO356_03210: AO356_03210 - hypothetical protein, at 713,917 to 714,168
_03210
AO356_03215: AO356_03215 - hypothetical protein, at 714,292 to 715,263
_03215
AO356_03220: AO356_03220 - hypothetical protein, at 715,516 to 715,809
_03220
AO356_03225: AO356_03225 - esterase, at 715,866 to 716,471
_03225
Position (kb) 714
715
716 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 713.314 kb on + strand at 713.314 kb on + strand at 713.314 kb on + strand at 713.348 kb on + strand at 713.348 kb on + strand at 713.349 kb on - strand at 713.349 kb on - strand at 713.418 kb on + strand at 713.418 kb on + strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.421 kb on + strand at 713.421 kb on + strand at 713.422 kb on - strand at 713.422 kb on - strand at 713.422 kb on - strand at 713.530 kb on + strand at 713.530 kb on + strand at 713.531 kb on - strand at 713.531 kb on - strand at 713.573 kb on + strand at 713.577 kb on + strand at 713.578 kb on - strand at 713.592 kb on + strand at 713.593 kb on - strand at 713.598 kb on + strand at 713.598 kb on + strand at 713.651 kb on + strand at 713.742 kb on - strand at 713.743 kb on + strand at 713.743 kb on + strand at 713.743 kb on + strand at 713.744 kb on - strand at 713.744 kb on - strand at 713.744 kb on - strand at 713.826 kb on - strand at 713.829 kb on + strand at 713.830 kb on - strand at 713.832 kb on + strand at 713.832 kb on + strand at 713.833 kb on - strand at 713.838 kb on + strand at 713.848 kb on + strand at 713.848 kb on + strand at 713.848 kb on + strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.889 kb on + strand at 713.889 kb on + strand at 713.889 kb on + strand at 713.890 kb on - strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.893 kb on - strand at 713.893 kb on - strand at 713.893 kb on - strand at 713.893 kb on - strand at 714.061 kb on + strand, within AO356_03210 at 714.066 kb on + strand, within AO356_03210 at 714.166 kb on + strand at 714.166 kb on + strand at 714.166 kb on + strand at 714.166 kb on + strand at 714.166 kb on + strand at 714.167 kb on - strand at 714.167 kb on - strand at 714.167 kb on - strand at 714.169 kb on + strand at 714.170 kb on - strand at 714.170 kb on - strand at 714.293 kb on + strand at 714.294 kb on - strand at 714.340 kb on - strand at 714.340 kb on - strand at 714.510 kb on + strand, within AO356_03215 at 714.511 kb on - strand, within AO356_03215 at 714.525 kb on - strand, within AO356_03215 at 714.554 kb on + strand, within AO356_03215 at 714.555 kb on - strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.614 kb on - strand, within AO356_03215 at 714.614 kb on - strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.933 kb on - strand, within AO356_03215 at 714.933 kb on - strand, within AO356_03215 at 714.933 kb on - strand, within AO356_03215 at 714.935 kb on + strand, within AO356_03215 at 714.935 kb on + strand, within AO356_03215 at 714.936 kb on - strand, within AO356_03215 at 715.077 kb on - strand, within AO356_03215 at 715.077 kb on - strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.121 kb on + strand, within AO356_03215 at 715.121 kb on + strand, within AO356_03215 at 715.122 kb on - strand, within AO356_03215 at 715.296 kb on - strand at 715.312 kb on + strand at 715.312 kb on + strand at 715.312 kb on + strand at 715.313 kb on - strand at 715.313 kb on - strand at 715.313 kb on - strand at 715.328 kb on - strand at 715.427 kb on + strand at 715.427 kb on + strand at 715.427 kb on + strand at 715.428 kb on - strand at 715.517 kb on + strand at 715.517 kb on + strand at 715.518 kb on - strand at 715.518 kb on - strand at 715.856 kb on + strand at 715.881 kb on + strand at 716.029 kb on + strand, within AO356_03225 at 716.029 kb on + strand, within AO356_03225 at 716.029 kb on + strand, within AO356_03225 at 716.030 kb on - strand, within AO356_03225 at 716.053 kb on + strand, within AO356_03225 at 716.054 kb on - strand, within AO356_03225 at 716.065 kb on + strand, within AO356_03225 at 716.066 kb on - strand, within AO356_03225
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM remove 713,314 + +1.3 713,314 + +1.0 713,314 + +0.7 713,348 + +0.6 713,348 + +0.1 713,349 - +2.2 713,349 - +0.8 713,418 + +0.1 713,418 + -1.9 713,419 - +1.7 713,419 - +0.3 713,419 - -0.0 713,419 - +2.3 713,419 - +2.2 713,421 + +0.6 713,421 + +1.1 713,422 - +1.3 713,422 - +1.7 713,422 - +2.1 713,530 + +0.1 713,530 + -2.3 713,531 - +2.8 713,531 - +1.8 713,573 + -1.0 713,577 + +1.3 713,578 - +1.6 713,592 + -1.0 713,593 - +2.0 713,598 + +1.4 713,598 + -0.1 713,651 + -1.7 713,742 - +3.2 713,743 + +0.3 713,743 + +0.4 713,743 + +1.2 713,744 - +1.8 713,744 - +2.8 713,744 - +2.2 713,826 - +3.7 713,829 + +1.0 713,830 - +1.5 713,832 + +1.8 713,832 + +2.2 713,833 - +1.9 713,838 + -0.1 713,848 + +1.5 713,848 + +2.2 713,848 + -0.1 713,849 - +1.9 713,849 - +2.1 713,849 - +2.7 713,849 - +2.3 713,849 - +2.2 713,849 - +2.5 713,889 + +1.1 713,889 + +1.6 713,889 + -0.4 713,890 - +1.1 713,892 + +0.8 713,892 + +2.1 713,892 + +1.0 713,892 + +1.2 713,892 + +2.1 713,892 + +0.2 713,892 + +3.2 713,892 + +2.1 713,892 + +0.9 713,892 + +2.8 713,893 - +1.9 713,893 - +3.9 713,893 - +0.6 713,893 - +2.3 714,061 + AO356_03210 0.57 +1.7 714,066 + AO356_03210 0.59 +2.0 714,166 + +3.3 714,166 + +1.7 714,166 + +1.7 714,166 + +0.4 714,166 + +0.2 714,167 - +0.4 714,167 - +1.9 714,167 - +2.8 714,169 + +1.7 714,170 - +1.9 714,170 - +2.3 714,293 + +0.7 714,294 - -0.4 714,340 - +0.3 714,340 - -0.5 714,510 + AO356_03215 0.22 +1.7 714,511 - AO356_03215 0.23 +0.7 714,525 - AO356_03215 0.24 +1.6 714,554 + AO356_03215 0.27 +2.1 714,555 - AO356_03215 0.27 +2.3 714,613 + AO356_03215 0.33 +2.2 714,613 + AO356_03215 0.33 +2.1 714,613 + AO356_03215 0.33 +2.2 714,613 + AO356_03215 0.33 +2.5 714,613 + AO356_03215 0.33 +1.1 714,614 - AO356_03215 0.33 +0.1 714,614 - AO356_03215 0.33 -0.1 714,905 + AO356_03215 0.63 -0.4 714,905 + AO356_03215 0.63 +1.9 714,905 + AO356_03215 0.63 +1.3 714,905 + AO356_03215 0.63 +1.5 714,905 + AO356_03215 0.63 +1.7 714,906 - AO356_03215 0.63 +1.8 714,906 - AO356_03215 0.63 +1.7 714,906 - AO356_03215 0.63 +2.0 714,906 - AO356_03215 0.63 +0.9 714,906 - AO356_03215 0.63 +1.1 714,906 - AO356_03215 0.63 +1.0 714,932 + AO356_03215 0.66 +0.7 714,932 + AO356_03215 0.66 +1.9 714,932 + AO356_03215 0.66 +2.4 714,932 + AO356_03215 0.66 +1.5 714,932 + AO356_03215 0.66 +2.2 714,933 - AO356_03215 0.66 +2.2 714,933 - AO356_03215 0.66 +1.7 714,933 - AO356_03215 0.66 +1.8 714,935 + AO356_03215 0.66 +2.1 714,935 + AO356_03215 0.66 +0.5 714,936 - AO356_03215 0.66 +2.2 715,077 - AO356_03215 0.81 +2.2 715,077 - AO356_03215 0.81 +2.5 715,088 + AO356_03215 0.82 +2.6 715,088 + AO356_03215 0.82 -0.1 715,088 + AO356_03215 0.82 +1.1 715,088 + AO356_03215 0.82 +1.7 715,088 + AO356_03215 0.82 +3.0 715,088 + AO356_03215 0.82 +2.7 715,088 + AO356_03215 0.82 +0.8 715,088 + AO356_03215 0.82 +1.5 715,088 + AO356_03215 0.82 +2.2 715,088 + AO356_03215 0.82 +2.3 715,089 - AO356_03215 0.82 +2.1 715,089 - AO356_03215 0.82 +1.2 715,089 - AO356_03215 0.82 +1.7 715,089 - AO356_03215 0.82 +2.6 715,089 - AO356_03215 0.82 +2.2 715,089 - AO356_03215 0.82 +2.1 715,121 + AO356_03215 0.85 +1.4 715,121 + AO356_03215 0.85 +2.5 715,122 - AO356_03215 0.85 +2.8 715,296 - +0.8 715,312 + +2.4 715,312 + +1.1 715,312 + +1.0 715,313 - +1.1 715,313 - +1.2 715,313 - +0.5 715,328 - +1.6 715,427 + +0.9 715,427 + +0.0 715,427 + +1.7 715,428 - -1.3 715,517 + -1.1 715,517 + +0.1 715,518 - +2.2 715,518 - -0.3 715,856 + +0.3 715,881 + +1.4 716,029 + AO356_03225 0.27 +0.3 716,029 + AO356_03225 0.27 +0.2 716,029 + AO356_03225 0.27 -1.1 716,030 - AO356_03225 0.27 -0.4 716,053 + AO356_03225 0.31 +1.8 716,054 - AO356_03225 0.31 -2.5 716,065 + AO356_03225 0.33 +0.0 716,066 - AO356_03225 0.33 -0.3
Or see this region's nucleotide sequence