Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01815 and AO356_01820 are separated by 200 nucleotides AO356_01820 and AO356_01825 are separated by 129 nucleotides AO356_01825 and AO356_01830 are separated by 6 nucleotides
AO356_01815: AO356_01815 - serine/threonine protein kinase, at 406,038 to 407,270
_01815
AO356_01820: AO356_01820 - hypothetical protein, at 407,471 to 407,980
_01820
AO356_01825: AO356_01825 - hypothetical protein, at 408,110 to 408,757
_01825
AO356_01830: AO356_01830 - shikimate dehydrogenase, at 408,764 to 409,585
_01830
Position (kb) 408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 407.404 kb on + strand at 407.404 kb on + strand at 407.405 kb on - strand at 407.405 kb on - strand at 407.405 kb on - strand at 407.405 kb on - strand at 407.405 kb on - strand at 407.405 kb on - strand at 407.405 kb on - strand at 407.473 kb on - strand at 407.473 kb on - strand at 407.487 kb on + strand at 407.487 kb on + strand at 407.488 kb on - strand at 407.488 kb on - strand at 407.488 kb on - strand at 407.488 kb on - strand at 407.532 kb on + strand, within AO356_01820 at 407.532 kb on + strand, within AO356_01820 at 407.532 kb on + strand, within AO356_01820 at 407.532 kb on + strand, within AO356_01820 at 407.532 kb on + strand, within AO356_01820 at 407.532 kb on + strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.533 kb on - strand, within AO356_01820 at 407.571 kb on + strand, within AO356_01820 at 407.583 kb on + strand, within AO356_01820 at 407.583 kb on + strand, within AO356_01820 at 407.584 kb on - strand, within AO356_01820 at 407.584 kb on - strand, within AO356_01820 at 407.584 kb on - strand, within AO356_01820 at 407.694 kb on - strand, within AO356_01820 at 407.694 kb on - strand, within AO356_01820 at 407.694 kb on - strand, within AO356_01820 at 407.745 kb on + strand, within AO356_01820 at 407.745 kb on + strand, within AO356_01820 at 407.745 kb on + strand, within AO356_01820 at 407.745 kb on + strand, within AO356_01820 at 407.745 kb on + strand, within AO356_01820 at 407.746 kb on - strand, within AO356_01820 at 407.746 kb on - strand, within AO356_01820 at 407.746 kb on - strand, within AO356_01820 at 407.746 kb on - strand, within AO356_01820 at 407.746 kb on - strand, within AO356_01820 at 407.964 kb on + strand at 407.974 kb on + strand at 407.974 kb on + strand at 407.974 kb on + strand at 407.974 kb on + strand at 407.975 kb on - strand at 407.975 kb on - strand at 408.028 kb on + strand at 408.030 kb on + strand at 408.030 kb on + strand at 408.030 kb on + strand at 408.031 kb on - strand at 408.060 kb on + strand at 408.074 kb on + strand at 408.075 kb on - strand at 408.075 kb on - strand at 408.154 kb on + strand at 408.154 kb on + strand at 408.215 kb on + strand, within AO356_01825 at 408.216 kb on - strand, within AO356_01825 at 408.596 kb on + strand, within AO356_01825 at 408.596 kb on + strand, within AO356_01825 at 408.596 kb on + strand, within AO356_01825 at 408.597 kb on - strand, within AO356_01825 at 408.597 kb on - strand, within AO356_01825 at 408.756 kb on - strand at 408.765 kb on + strand at 408.829 kb on - strand at 409.267 kb on - strand, within AO356_01830 at 409.267 kb on - strand, within AO356_01830 at 409.267 kb on - strand, within AO356_01830 at 409.278 kb on + strand, within AO356_01830 at 409.278 kb on + strand, within AO356_01830 at 409.278 kb on + strand, within AO356_01830 at 409.279 kb on - strand, within AO356_01830 at 409.300 kb on + strand, within AO356_01830 at 409.301 kb on - strand, within AO356_01830 at 409.301 kb on - strand, within AO356_01830 at 409.312 kb on + strand, within AO356_01830 at 409.313 kb on - strand, within AO356_01830 at 409.467 kb on + strand, within AO356_01830 at 409.468 kb on - strand, within AO356_01830 at 409.468 kb on - strand, within AO356_01830 at 409.468 kb on - strand, within AO356_01830 at 409.468 kb on - strand, within AO356_01830 at 409.471 kb on - strand, within AO356_01830 at 409.471 kb on - strand, within AO356_01830 at 409.494 kb on + strand, within AO356_01830 at 409.494 kb on + strand, within AO356_01830 at 409.504 kb on + strand at 409.504 kb on + strand at 409.640 kb on + strand at 409.641 kb on - strand at 409.723 kb on + strand at 409.723 kb on + strand at 409.724 kb on - strand at 409.730 kb on + strand at 409.730 kb on + strand at 409.730 kb on + strand at 409.730 kb on + strand at 409.731 kb on - strand at 409.731 kb on - strand at 409.731 kb on - strand at 409.731 kb on - strand at 409.731 kb on - strand at 409.731 kb on - strand at 409.731 kb on - strand at 409.731 kb on - strand at 409.731 kb on - strand at 409.735 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM remove 407,404 + -0.8 407,404 + +0.9 407,405 - +2.1 407,405 - -2.0 407,405 - -0.1 407,405 - -0.2 407,405 - +1.1 407,405 - +0.8 407,405 - -0.4 407,473 - -1.3 407,473 - +0.5 407,487 + -0.6 407,487 + +0.8 407,488 - +0.9 407,488 - -0.3 407,488 - +0.9 407,488 - +0.7 407,532 + AO356_01820 0.12 +0.8 407,532 + AO356_01820 0.12 -1.8 407,532 + AO356_01820 0.12 -0.3 407,532 + AO356_01820 0.12 -0.4 407,532 + AO356_01820 0.12 +0.6 407,532 + AO356_01820 0.12 -2.5 407,533 - AO356_01820 0.12 +0.5 407,533 - AO356_01820 0.12 -0.0 407,533 - AO356_01820 0.12 -1.3 407,533 - AO356_01820 0.12 +0.4 407,533 - AO356_01820 0.12 +1.2 407,533 - AO356_01820 0.12 -0.8 407,533 - AO356_01820 0.12 +0.1 407,533 - AO356_01820 0.12 -1.7 407,533 - AO356_01820 0.12 +0.8 407,533 - AO356_01820 0.12 -1.6 407,533 - AO356_01820 0.12 +0.9 407,533 - AO356_01820 0.12 -2.0 407,533 - AO356_01820 0.12 -0.2 407,571 + AO356_01820 0.20 -0.8 407,583 + AO356_01820 0.22 +0.5 407,583 + AO356_01820 0.22 +1.7 407,584 - AO356_01820 0.22 +1.2 407,584 - AO356_01820 0.22 -0.6 407,584 - AO356_01820 0.22 +0.3 407,694 - AO356_01820 0.44 -1.8 407,694 - AO356_01820 0.44 +1.9 407,694 - AO356_01820 0.44 -0.8 407,745 + AO356_01820 0.54 -1.9 407,745 + AO356_01820 0.54 -0.1 407,745 + AO356_01820 0.54 -0.4 407,745 + AO356_01820 0.54 -1.6 407,745 + AO356_01820 0.54 +0.4 407,746 - AO356_01820 0.54 -1.6 407,746 - AO356_01820 0.54 +0.3 407,746 - AO356_01820 0.54 +1.0 407,746 - AO356_01820 0.54 -1.6 407,746 - AO356_01820 0.54 +0.4 407,964 + +1.6 407,974 + +0.2 407,974 + -1.0 407,974 + -2.6 407,974 + +1.4 407,975 - -1.0 407,975 - +0.5 408,028 + +0.5 408,030 + +0.8 408,030 + +0.5 408,030 + +0.4 408,031 - -3.1 408,060 + +1.1 408,074 + -1.6 408,075 - -0.0 408,075 - -0.7 408,154 + -1.5 408,154 + -0.5 408,215 + AO356_01825 0.16 -1.8 408,216 - AO356_01825 0.16 -0.7 408,596 + AO356_01825 0.75 -1.9 408,596 + AO356_01825 0.75 -0.7 408,596 + AO356_01825 0.75 -0.5 408,597 - AO356_01825 0.75 -0.7 408,597 - AO356_01825 0.75 -0.2 408,756 - +1.5 408,765 + -0.0 408,829 - +1.4 409,267 - AO356_01830 0.61 +1.5 409,267 - AO356_01830 0.61 -0.1 409,267 - AO356_01830 0.61 +0.2 409,278 + AO356_01830 0.63 +1.0 409,278 + AO356_01830 0.63 -1.8 409,278 + AO356_01830 0.63 -3.0 409,279 - AO356_01830 0.63 +1.6 409,300 + AO356_01830 0.65 -1.0 409,301 - AO356_01830 0.65 -1.5 409,301 - AO356_01830 0.65 +0.2 409,312 + AO356_01830 0.67 +1.6 409,313 - AO356_01830 0.67 -0.2 409,467 + AO356_01830 0.86 -0.0 409,468 - AO356_01830 0.86 +0.8 409,468 - AO356_01830 0.86 -0.4 409,468 - AO356_01830 0.86 +0.6 409,468 - AO356_01830 0.86 +0.9 409,471 - AO356_01830 0.86 -1.2 409,471 - AO356_01830 0.86 -0.6 409,494 + AO356_01830 0.89 +2.1 409,494 + AO356_01830 0.89 -2.2 409,504 + +0.6 409,504 + +0.1 409,640 + +0.2 409,641 - -0.1 409,723 + +2.3 409,723 + -0.4 409,724 - +1.7 409,730 + +1.2 409,730 + -2.5 409,730 + +0.6 409,730 + -2.8 409,731 - +0.9 409,731 - +0.0 409,731 - +0.2 409,731 - +0.5 409,731 - +0.9 409,731 - +0.7 409,731 - +0.6 409,731 - -0.3 409,731 - +1.1 409,735 - +0.4
Or see this region's nucleotide sequence