Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01705

Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01700 and AO356_01705 are separated by 239 nucleotidesAO356_01705 and AO356_01710 are separated by 173 nucleotides AO356_01700: AO356_01700 - 2,4-dienoyl-CoA reductase, at 381,942 to 383,981 _01700 AO356_01705: AO356_01705 - hypothetical protein, at 384,221 to 385,438 _01705 AO356_01710: AO356_01710 - carbon-nitrogen hydrolase, at 385,612 to 386,742 _01710 Position (kb) 384 385 386Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 383.336 kb on + strand, within AO356_01700at 383.336 kb on + strand, within AO356_01700at 383.336 kb on + strand, within AO356_01700at 383.337 kb on - strand, within AO356_01700at 383.355 kb on + strand, within AO356_01700at 383.410 kb on + strand, within AO356_01700at 383.410 kb on + strand, within AO356_01700at 383.473 kb on + strand, within AO356_01700at 383.473 kb on + strand, within AO356_01700at 383.474 kb on - strand, within AO356_01700at 383.506 kb on + strand, within AO356_01700at 383.645 kb on - strand, within AO356_01700at 383.651 kb on - strand, within AO356_01700at 383.845 kb on + strandat 383.846 kb on - strandat 383.912 kb on + strandat 384.054 kb on + strandat 384.054 kb on + strandat 384.054 kb on + strandat 384.054 kb on + strandat 384.055 kb on - strandat 384.055 kb on - strandat 384.055 kb on - strandat 384.055 kb on - strandat 384.055 kb on - strandat 384.055 kb on - strandat 384.055 kb on - strandat 384.097 kb on + strandat 384.097 kb on + strandat 384.161 kb on + strandat 384.161 kb on + strandat 384.161 kb on + strandat 384.162 kb on - strandat 384.162 kb on - strandat 384.194 kb on + strandat 384.195 kb on - strandat 384.195 kb on - strandat 384.195 kb on - strandat 384.201 kb on - strandat 384.201 kb on - strandat 384.201 kb on - strandat 384.203 kb on + strandat 384.203 kb on + strandat 384.275 kb on + strandat 384.275 kb on + strandat 384.599 kb on + strand, within AO356_01705at 384.599 kb on + strand, within AO356_01705at 384.767 kb on + strand, within AO356_01705at 384.767 kb on + strand, within AO356_01705at 384.767 kb on + strand, within AO356_01705at 384.768 kb on - strand, within AO356_01705at 384.768 kb on - strand, within AO356_01705at 384.980 kb on + strand, within AO356_01705at 385.088 kb on + strand, within AO356_01705at 385.283 kb on + strand, within AO356_01705at 385.283 kb on + strand, within AO356_01705at 385.283 kb on + strand, within AO356_01705at 385.283 kb on + strand, within AO356_01705at 385.284 kb on - strand, within AO356_01705at 385.284 kb on - strand, within AO356_01705at 385.284 kb on - strand, within AO356_01705at 385.284 kb on - strand, within AO356_01705at 385.286 kb on + strand, within AO356_01705at 385.286 kb on + strand, within AO356_01705at 385.286 kb on + strand, within AO356_01705at 385.286 kb on + strand, within AO356_01705at 385.286 kb on + strand, within AO356_01705at 385.314 kb on - strand, within AO356_01705at 385.314 kb on - strand, within AO356_01705at 385.327 kb on + strandat 385.327 kb on + strandat 385.327 kb on + strandat 385.327 kb on + strandat 385.327 kb on + strandat 385.327 kb on + strandat 385.328 kb on - strandat 385.328 kb on - strandat 385.328 kb on - strandat 385.328 kb on - strandat 385.328 kb on - strandat 385.560 kb on + strandat 385.628 kb on - strandat 385.669 kb on + strandat 385.669 kb on + strandat 385.669 kb on + strandat 385.669 kb on + strandat 385.669 kb on + strandat 385.670 kb on - strandat 385.670 kb on - strandat 385.670 kb on - strandat 385.670 kb on - strandat 385.705 kb on + strandat 385.705 kb on + strandat 385.705 kb on + strandat 385.706 kb on - strandat 385.706 kb on - strandat 385.706 kb on - strandat 385.722 kb on + strandat 385.805 kb on - strand, within AO356_01710at 385.843 kb on + strand, within AO356_01710at 385.844 kb on - strand, within AO356_01710at 385.951 kb on + strand, within AO356_01710at 385.952 kb on - strand, within AO356_01710at 385.952 kb on - strand, within AO356_01710at 386.098 kb on + strand, within AO356_01710at 386.219 kb on - strand, within AO356_01710at 386.219 kb on - strand, within AO356_01710at 386.342 kb on + strand, within AO356_01710at 386.343 kb on - strand, within AO356_01710at 386.343 kb on - strand, within AO356_01710at 386.343 kb on - strand, within AO356_01710

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM
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383,336 + AO356_01700 0.68 -0.7
383,336 + AO356_01700 0.68 +1.2
383,336 + AO356_01700 0.68 +0.4
383,337 - AO356_01700 0.68 +0.0
383,355 + AO356_01700 0.69 -0.0
383,410 + AO356_01700 0.72 +0.2
383,410 + AO356_01700 0.72 -0.6
383,473 + AO356_01700 0.75 +1.0
383,473 + AO356_01700 0.75 +0.8
383,474 - AO356_01700 0.75 +0.9
383,506 + AO356_01700 0.77 +2.2
383,645 - AO356_01700 0.83 +1.4
383,651 - AO356_01700 0.84 -0.4
383,845 + +0.2
383,846 - -1.5
383,912 + +1.5
384,054 + +0.4
384,054 + +0.5
384,054 + -0.1
384,054 + +1.2
384,055 - +0.7
384,055 - -1.0
384,055 - +0.6
384,055 - +0.7
384,055 - +1.4
384,055 - +0.6
384,055 - -1.2
384,097 + +1.0
384,097 + +2.2
384,161 + +1.7
384,161 + +0.7
384,161 + -0.2
384,162 - +0.3
384,162 - -0.2
384,194 + +1.7
384,195 - +1.7
384,195 - -0.3
384,195 - -0.4
384,201 - -0.6
384,201 - +0.3
384,201 - +1.0
384,203 + +1.3
384,203 + -1.0
384,275 + +0.5
384,275 + -2.6
384,599 + AO356_01705 0.31 -0.3
384,599 + AO356_01705 0.31 +1.0
384,767 + AO356_01705 0.45 -0.3
384,767 + AO356_01705 0.45 -0.9
384,767 + AO356_01705 0.45 -0.7
384,768 - AO356_01705 0.45 +1.2
384,768 - AO356_01705 0.45 +0.5
384,980 + AO356_01705 0.62 -0.6
385,088 + AO356_01705 0.71 -0.4
385,283 + AO356_01705 0.87 -0.8
385,283 + AO356_01705 0.87 -0.2
385,283 + AO356_01705 0.87 -0.7
385,283 + AO356_01705 0.87 -0.2
385,284 - AO356_01705 0.87 +0.9
385,284 - AO356_01705 0.87 -1.2
385,284 - AO356_01705 0.87 +0.6
385,284 - AO356_01705 0.87 +0.3
385,286 + AO356_01705 0.87 +0.5
385,286 + AO356_01705 0.87 -0.0
385,286 + AO356_01705 0.87 -0.1
385,286 + AO356_01705 0.87 -0.6
385,286 + AO356_01705 0.87 +0.0
385,314 - AO356_01705 0.90 +0.0
385,314 - AO356_01705 0.90 -0.2
385,327 + +0.7
385,327 + -1.0
385,327 + -0.7
385,327 + +0.2
385,327 + +0.8
385,327 + -1.8
385,328 - -0.8
385,328 - -0.2
385,328 - -0.5
385,328 - +1.2
385,328 - -0.5
385,560 + -0.3
385,628 - -0.0
385,669 + -0.9
385,669 + -0.5
385,669 + +2.8
385,669 + +0.4
385,669 + -0.4
385,670 - +0.8
385,670 - -0.1
385,670 - +0.4
385,670 - +0.4
385,705 + +0.1
385,705 + -0.6
385,705 + -3.0
385,706 - -0.2
385,706 - +0.7
385,706 - +0.6
385,722 + +0.5
385,805 - AO356_01710 0.17 -2.4
385,843 + AO356_01710 0.20 -0.9
385,844 - AO356_01710 0.21 -0.8
385,951 + AO356_01710 0.30 +0.1
385,952 - AO356_01710 0.30 +0.9
385,952 - AO356_01710 0.30 -0.3
386,098 + AO356_01710 0.43 +0.1
386,219 - AO356_01710 0.54 -1.0
386,219 - AO356_01710 0.54 +0.6
386,342 + AO356_01710 0.65 -1.1
386,343 - AO356_01710 0.65 -0.8
386,343 - AO356_01710 0.65 +0.5
386,343 - AO356_01710 0.65 -2.4

Or see this region's nucleotide sequence