Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00920 and AO356_00925 are separated by 67 nucleotides AO356_00925 and AO356_00930 are separated by 156 nucleotides AO356_00930 and AO356_00935 are separated by 129 nucleotides AO356_00935 and AO356_00940 are separated by 47 nucleotides
AO356_00920: AO356_00920 - cold-shock protein, at 213,298 to 213,510
_00920
AO356_00925: AO356_00925 - hypothetical protein, at 213,578 to 213,892
_00925
AO356_00930: AO356_00930 - hypothetical protein, at 214,049 to 214,354
_00930
AO356_00935: AO356_00935 - hypothetical protein, at 214,484 to 214,681
_00935
AO356_00940: AO356_00940 - uridine/adenosine nucleosidase (EC 3.2.2.3; EC 3.2.2.7) <small>(from data)</small>, at 214,729 to 215,757
_00940
Position (kb) 214
215 Strain fitness (log2 ratio) -2
-1
0
1
2 at 213.509 kb on - strand at 213.706 kb on + strand, within AO356_00925 at 213.865 kb on + strand at 213.866 kb on - strand at 213.915 kb on + strand at 213.916 kb on - strand at 214.038 kb on - strand at 214.053 kb on + strand at 214.053 kb on + strand at 214.054 kb on - strand at 214.054 kb on - strand at 214.065 kb on + strand at 214.066 kb on - strand at 214.108 kb on - strand, within AO356_00930 at 214.108 kb on - strand, within AO356_00930 at 214.108 kb on - strand, within AO356_00930 at 214.108 kb on - strand, within AO356_00930 at 214.108 kb on - strand, within AO356_00930 at 214.108 kb on - strand, within AO356_00930 at 214.156 kb on - strand, within AO356_00930 at 214.236 kb on + strand, within AO356_00930 at 214.236 kb on + strand, within AO356_00930 at 214.236 kb on + strand, within AO356_00930 at 214.237 kb on - strand, within AO356_00930 at 214.237 kb on - strand, within AO356_00930 at 214.271 kb on - strand, within AO356_00930 at 214.346 kb on + strand at 214.347 kb on - strand at 214.347 kb on - strand at 214.412 kb on + strand at 214.413 kb on - strand at 214.413 kb on - strand at 214.413 kb on - strand at 214.446 kb on + strand at 214.446 kb on + strand at 214.456 kb on + strand at 214.456 kb on + strand at 214.457 kb on - strand at 214.457 kb on - strand at 214.499 kb on - strand at 214.544 kb on + strand, within AO356_00935 at 214.544 kb on + strand, within AO356_00935 at 214.544 kb on + strand, within AO356_00935 at 214.545 kb on - strand, within AO356_00935 at 214.585 kb on - strand, within AO356_00935 at 214.585 kb on - strand, within AO356_00935 at 214.612 kb on - strand, within AO356_00935 at 214.715 kb on - strand at 214.715 kb on - strand at 214.717 kb on - strand at 214.731 kb on - strand at 214.829 kb on + strand at 214.830 kb on - strand at 214.830 kb on - strand at 214.925 kb on + strand, within AO356_00940 at 214.926 kb on - strand, within AO356_00940 at 214.926 kb on - strand, within AO356_00940 at 214.926 kb on - strand, within AO356_00940 at 214.970 kb on + strand, within AO356_00940 at 214.994 kb on + strand, within AO356_00940 at 214.994 kb on + strand, within AO356_00940 at 214.995 kb on - strand, within AO356_00940 at 214.995 kb on - strand, within AO356_00940 at 214.995 kb on - strand, within AO356_00940 at 215.105 kb on + strand, within AO356_00940 at 215.105 kb on + strand, within AO356_00940 at 215.106 kb on - strand, within AO356_00940 at 215.187 kb on + strand, within AO356_00940 at 215.187 kb on + strand, within AO356_00940 at 215.187 kb on + strand, within AO356_00940 at 215.188 kb on - strand, within AO356_00940 at 215.348 kb on + strand, within AO356_00940 at 215.349 kb on - strand, within AO356_00940 at 215.349 kb on - strand, within AO356_00940 at 215.438 kb on + strand, within AO356_00940 at 215.439 kb on - strand, within AO356_00940
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM remove 213,509 - -0.2 213,706 + AO356_00925 0.41 +1.2 213,865 + -0.4 213,866 - -1.4 213,915 + +1.3 213,916 - -0.3 214,038 - -0.8 214,053 + +1.6 214,053 + +0.4 214,054 - +0.2 214,054 - -2.5 214,065 + +0.5 214,066 - +0.8 214,108 - AO356_00930 0.19 +0.3 214,108 - AO356_00930 0.19 +1.4 214,108 - AO356_00930 0.19 +2.4 214,108 - AO356_00930 0.19 +0.3 214,108 - AO356_00930 0.19 +2.0 214,108 - AO356_00930 0.19 +0.1 214,156 - AO356_00930 0.35 -1.0 214,236 + AO356_00930 0.61 +1.7 214,236 + AO356_00930 0.61 +0.8 214,236 + AO356_00930 0.61 -0.2 214,237 - AO356_00930 0.61 +0.3 214,237 - AO356_00930 0.61 +1.0 214,271 - AO356_00930 0.73 +0.9 214,346 + -0.4 214,347 - +0.5 214,347 - +1.8 214,412 + -0.0 214,413 - +1.9 214,413 - +0.2 214,413 - -0.6 214,446 + -1.6 214,446 + +0.0 214,456 + +1.4 214,456 + +0.6 214,457 - +1.1 214,457 - +0.1 214,499 - +1.4 214,544 + AO356_00935 0.30 +0.3 214,544 + AO356_00935 0.30 +2.1 214,544 + AO356_00935 0.30 +0.9 214,545 - AO356_00935 0.31 +0.8 214,585 - AO356_00935 0.51 +0.4 214,585 - AO356_00935 0.51 -1.5 214,612 - AO356_00935 0.65 +0.6 214,715 - -1.5 214,715 - -0.5 214,717 - -0.9 214,731 - +1.1 214,829 + -0.7 214,830 - +0.0 214,830 - -1.8 214,925 + AO356_00940 0.19 -0.9 214,926 - AO356_00940 0.19 +0.7 214,926 - AO356_00940 0.19 -0.5 214,926 - AO356_00940 0.19 +1.0 214,970 + AO356_00940 0.23 +1.0 214,994 + AO356_00940 0.26 +0.6 214,994 + AO356_00940 0.26 +1.0 214,995 - AO356_00940 0.26 -0.9 214,995 - AO356_00940 0.26 +1.3 214,995 - AO356_00940 0.26 -0.9 215,105 + AO356_00940 0.37 +1.6 215,105 + AO356_00940 0.37 +0.5 215,106 - AO356_00940 0.37 +1.6 215,187 + AO356_00940 0.45 -0.7 215,187 + AO356_00940 0.45 +1.9 215,187 + AO356_00940 0.45 +1.0 215,188 - AO356_00940 0.45 -2.0 215,348 + AO356_00940 0.60 -0.0 215,349 - AO356_00940 0.60 +0.6 215,349 - AO356_00940 0.60 -0.3 215,438 + AO356_00940 0.69 -1.5 215,439 - AO356_00940 0.69 -1.0
Or see this region's nucleotide sequence