Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00800 and AO356_00805 overlap by 10 nucleotides AO356_00805 and AO356_00810 are separated by 60 nucleotides AO356_00810 and AO356_00815 are separated by 228 nucleotides
AO356_00800: AO356_00800 - UDP-N-acetylglucosamine 2-epimerase, at 181,014 to 182,123
_00800
AO356_00805: AO356_00805 - glycosyl transferase, at 182,114 to 183,220
_00805
AO356_00810: AO356_00810 - hypothetical protein, at 183,281 to 183,544
_00810
AO356_00815: AO356_00815 - hypothetical protein, at 183,773 to 185,794
_00815
Position (kb) 182
183
184 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 181.288 kb on + strand, within AO356_00800 at 181.288 kb on + strand, within AO356_00800 at 181.341 kb on + strand, within AO356_00800 at 181.661 kb on + strand, within AO356_00800 at 181.661 kb on + strand, within AO356_00800 at 181.716 kb on + strand, within AO356_00800 at 181.817 kb on + strand, within AO356_00800 at 181.818 kb on - strand, within AO356_00800 at 181.839 kb on + strand, within AO356_00800 at 181.840 kb on - strand, within AO356_00800 at 182.026 kb on - strand at 182.095 kb on + strand at 182.095 kb on + strand at 182.103 kb on + strand at 182.104 kb on - strand at 182.104 kb on - strand at 182.104 kb on - strand at 182.126 kb on + strand at 182.127 kb on - strand at 182.605 kb on - strand, within AO356_00805 at 182.605 kb on - strand, within AO356_00805 at 182.744 kb on + strand, within AO356_00805 at 182.745 kb on - strand, within AO356_00805 at 182.745 kb on - strand, within AO356_00805 at 182.787 kb on + strand, within AO356_00805 at 182.788 kb on - strand, within AO356_00805 at 182.993 kb on + strand, within AO356_00805 at 182.994 kb on - strand, within AO356_00805 at 183.271 kb on + strand at 183.271 kb on + strand at 183.272 kb on - strand at 183.293 kb on + strand at 183.293 kb on + strand at 183.294 kb on - strand at 183.333 kb on - strand, within AO356_00810 at 183.333 kb on - strand, within AO356_00810 at 183.592 kb on + strand at 183.600 kb on + strand at 183.600 kb on + strand at 183.601 kb on - strand at 183.625 kb on + strand at 183.625 kb on + strand at 183.625 kb on + strand at 183.625 kb on + strand at 183.625 kb on + strand at 183.626 kb on - strand at 183.626 kb on - strand at 183.626 kb on - strand at 183.626 kb on - strand at 183.626 kb on - strand at 183.651 kb on + strand at 183.651 kb on + strand at 183.652 kb on - strand at 183.652 kb on - strand at 183.655 kb on + strand at 183.655 kb on + strand at 183.655 kb on + strand at 183.749 kb on + strand at 183.749 kb on + strand at 183.749 kb on + strand at 183.750 kb on - strand at 183.750 kb on - strand at 183.750 kb on - strand at 183.750 kb on - strand at 183.750 kb on - strand at 183.887 kb on + strand at 183.887 kb on + strand at 183.887 kb on + strand at 183.887 kb on + strand at 183.887 kb on + strand at 183.888 kb on - strand at 183.888 kb on - strand at 183.888 kb on - strand at 183.888 kb on - strand at 184.037 kb on + strand, within AO356_00815 at 184.037 kb on + strand, within AO356_00815 at 184.038 kb on - strand, within AO356_00815 at 184.038 kb on - strand, within AO356_00815 at 184.040 kb on + strand, within AO356_00815 at 184.041 kb on - strand, within AO356_00815 at 184.041 kb on - strand, within AO356_00815 at 184.137 kb on - strand, within AO356_00815 at 184.161 kb on - strand, within AO356_00815 at 184.176 kb on - strand, within AO356_00815
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM remove 181,288 + AO356_00800 0.25 +0.6 181,288 + AO356_00800 0.25 -0.6 181,341 + AO356_00800 0.29 -1.5 181,661 + AO356_00800 0.58 +0.4 181,661 + AO356_00800 0.58 -0.3 181,716 + AO356_00800 0.63 -0.9 181,817 + AO356_00800 0.72 +1.0 181,818 - AO356_00800 0.72 -0.2 181,839 + AO356_00800 0.74 -0.8 181,840 - AO356_00800 0.74 +2.0 182,026 - -1.4 182,095 + -1.2 182,095 + +0.9 182,103 + +0.1 182,104 - +1.2 182,104 - -0.2 182,104 - +0.7 182,126 + +0.6 182,127 - +1.9 182,605 - AO356_00805 0.44 -0.5 182,605 - AO356_00805 0.44 +0.1 182,744 + AO356_00805 0.57 +0.6 182,745 - AO356_00805 0.57 +1.0 182,745 - AO356_00805 0.57 +0.6 182,787 + AO356_00805 0.61 +0.7 182,788 - AO356_00805 0.61 +0.9 182,993 + AO356_00805 0.79 +0.6 182,994 - AO356_00805 0.79 -0.6 183,271 + +0.0 183,271 + -0.8 183,272 - +0.3 183,293 + +0.5 183,293 + -2.2 183,294 - +0.6 183,333 - AO356_00810 0.20 -0.8 183,333 - AO356_00810 0.20 +0.6 183,592 + +0.3 183,600 + +1.4 183,600 + +0.0 183,601 - +3.0 183,625 + -0.3 183,625 + -0.3 183,625 + +0.4 183,625 + +0.3 183,625 + +1.2 183,626 - +1.2 183,626 - +1.0 183,626 - +0.2 183,626 - +1.5 183,626 - -0.1 183,651 + -1.8 183,651 + +0.8 183,652 - -0.1 183,652 - +1.1 183,655 + -0.6 183,655 + +1.5 183,655 + -0.1 183,749 + -0.6 183,749 + +0.2 183,749 + +0.7 183,750 - -0.1 183,750 - -1.4 183,750 - +0.3 183,750 - -1.4 183,750 - +0.6 183,887 + +0.3 183,887 + +1.0 183,887 + -0.6 183,887 + +0.2 183,887 + -1.2 183,888 - +0.2 183,888 - -0.5 183,888 - -1.9 183,888 - +0.8 184,037 + AO356_00815 0.13 +1.2 184,037 + AO356_00815 0.13 -1.5 184,038 - AO356_00815 0.13 +1.6 184,038 - AO356_00815 0.13 -0.0 184,040 + AO356_00815 0.13 +0.7 184,041 - AO356_00815 0.13 +0.4 184,041 - AO356_00815 0.13 +1.0 184,137 - AO356_00815 0.18 +0.2 184,161 - AO356_00815 0.19 +1.5 184,176 - AO356_00815 0.20 +0.9
Or see this region's nucleotide sequence