Experiment: 1-ethyl-3-methylimidazolium chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00795 and AO356_00800 overlap by 4 nucleotides AO356_00800 and AO356_00805 overlap by 10 nucleotides
AO356_00795: AO356_00795 - 4Fe-4S ferredoxin, at 179,431 to 181,017
_00795
AO356_00800: AO356_00800 - UDP-N-acetylglucosamine 2-epimerase, at 181,014 to 182,123
_00800
AO356_00805: AO356_00805 - glycosyl transferase, at 182,114 to 183,220
_00805
Position (kb) 181
182
183 Strain fitness (log2 ratio) -2
-1
0
1
2 at 180.140 kb on - strand, within AO356_00795 at 180.175 kb on + strand, within AO356_00795 at 180.559 kb on + strand, within AO356_00795 at 180.559 kb on + strand, within AO356_00795 at 180.560 kb on - strand, within AO356_00795 at 180.560 kb on - strand, within AO356_00795 at 180.742 kb on + strand, within AO356_00795 at 180.897 kb on + strand at 180.897 kb on + strand at 180.898 kb on - strand at 181.027 kb on + strand at 181.028 kb on - strand at 181.100 kb on + strand at 181.101 kb on - strand at 181.288 kb on + strand, within AO356_00800 at 181.288 kb on + strand, within AO356_00800 at 181.341 kb on + strand, within AO356_00800 at 181.661 kb on + strand, within AO356_00800 at 181.661 kb on + strand, within AO356_00800 at 181.716 kb on + strand, within AO356_00800 at 181.817 kb on + strand, within AO356_00800 at 181.818 kb on - strand, within AO356_00800 at 181.839 kb on + strand, within AO356_00800 at 181.840 kb on - strand, within AO356_00800 at 182.026 kb on - strand at 182.095 kb on + strand at 182.095 kb on + strand at 182.103 kb on + strand at 182.104 kb on - strand at 182.104 kb on - strand at 182.104 kb on - strand at 182.126 kb on + strand at 182.127 kb on - strand at 182.605 kb on - strand, within AO356_00805 at 182.605 kb on - strand, within AO356_00805 at 182.744 kb on + strand, within AO356_00805 at 182.745 kb on - strand, within AO356_00805 at 182.745 kb on - strand, within AO356_00805 at 182.787 kb on + strand, within AO356_00805 at 182.788 kb on - strand, within AO356_00805 at 182.993 kb on + strand, within AO356_00805 at 182.994 kb on - strand, within AO356_00805
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium chloride 200 mM remove 180,140 - AO356_00795 0.45 -1.4 180,175 + AO356_00795 0.47 -1.1 180,559 + AO356_00795 0.71 -0.7 180,559 + AO356_00795 0.71 +1.6 180,560 - AO356_00795 0.71 +0.7 180,560 - AO356_00795 0.71 -0.6 180,742 + AO356_00795 0.83 +0.4 180,897 + +0.6 180,897 + -0.3 180,898 - +0.2 181,027 + +0.2 181,028 - -1.7 181,100 + -2.2 181,101 - -0.2 181,288 + AO356_00800 0.25 +0.6 181,288 + AO356_00800 0.25 -0.6 181,341 + AO356_00800 0.29 -1.5 181,661 + AO356_00800 0.58 +0.4 181,661 + AO356_00800 0.58 -0.3 181,716 + AO356_00800 0.63 -0.9 181,817 + AO356_00800 0.72 +1.0 181,818 - AO356_00800 0.72 -0.2 181,839 + AO356_00800 0.74 -0.8 181,840 - AO356_00800 0.74 +2.0 182,026 - -1.4 182,095 + -1.2 182,095 + +0.9 182,103 + +0.1 182,104 - +1.2 182,104 - -0.2 182,104 - +0.7 182,126 + +0.6 182,127 - +1.9 182,605 - AO356_00805 0.44 -0.5 182,605 - AO356_00805 0.44 +0.1 182,744 + AO356_00805 0.57 +0.6 182,745 - AO356_00805 0.57 +1.0 182,745 - AO356_00805 0.57 +0.6 182,787 + AO356_00805 0.61 +0.7 182,788 - AO356_00805 0.61 +0.9 182,993 + AO356_00805 0.79 +0.6 182,994 - AO356_00805 0.79 -0.6
Or see this region's nucleotide sequence