Strain Fitness in Shewanella loihica PV-4 around Shew_3551

Experiment: Bacitracin 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_3550 and Shew_3551 are separated by 99 nucleotidesShew_3551 and Shew_3552 are separated by 701 nucleotides Shew_3550: Shew_3550 - AraC family transcriptional regulator (RefSeq), at 4,237,977 to 4,238,753 _3550 Shew_3551: Shew_3551 - Bcr/CflA subfamily drug resistance transporter (RefSeq), at 4,238,853 to 4,239,992 _3551 Shew_3552: Shew_3552 - transposase IS116/IS110/IS902 family protein (RefSeq), at 4,240,694 to 4,241,707 _3552 Position (kb) 4238 4239 4240Strain fitness (log2 ratio) -1 0 1at 4237.889 kb on + strandat 4238.489 kb on + strand, within Shew_3550at 4238.660 kb on - strand, within Shew_3550at 4238.851 kb on - strandat 4238.926 kb on + strandat 4238.934 kb on - strandat 4238.934 kb on - strandat 4239.231 kb on - strand, within Shew_3551at 4239.241 kb on - strand, within Shew_3551at 4239.333 kb on + strand, within Shew_3551at 4239.337 kb on + strand, within Shew_3551at 4239.939 kb on - strandat 4239.998 kb on + strandat 4240.049 kb on - strandat 4240.251 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
remove
4,237,889 + +0.5
4,238,489 + Shew_3550 0.66 -0.2
4,238,660 - Shew_3550 0.88 -0.0
4,238,851 - -0.4
4,238,926 + +0.3
4,238,934 - -0.1
4,238,934 - +0.4
4,239,231 - Shew_3551 0.33 -0.1
4,239,241 - Shew_3551 0.34 +0.5
4,239,333 + Shew_3551 0.42 -0.1
4,239,337 + Shew_3551 0.42 +0.1
4,239,939 - +0.1
4,239,998 + -1.3
4,240,049 - -0.2
4,240,251 + +0.2

Or see this region's nucleotide sequence