Experiment: Bacitracin 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3420 and Shew_3421 are separated by 8 nucleotides Shew_3421 and Shew_3422 are separated by 116 nucleotides Shew_3422 and Shew_3423 are separated by 477 nucleotides
Shew_3420: Shew_3420 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 4,075,470 to 4,076,951
_3420
Shew_3421: Shew_3421 - hypothetical protein (RefSeq), at 4,076,960 to 4,077,235
_3421
Shew_3422: Shew_3422 - uroporphyrinogen decarboxylase (RefSeq), at 4,077,352 to 4,078,416
_3422
Shew_3423: Shew_3423 - anti-RNA polymerase sigma 70 factor (RefSeq), at 4,078,894 to 4,079,364
_3423
Position (kb) 4077
4078
4079 Strain fitness (log2 ratio) -1
0
1 at 4076.464 kb on - strand, within Shew_3420 at 4076.562 kb on - strand, within Shew_3420 at 4076.562 kb on - strand, within Shew_3420 at 4076.790 kb on - strand, within Shew_3420 at 4077.049 kb on - strand, within Shew_3421 at 4078.589 kb on - strand at 4078.897 kb on - strand at 4078.970 kb on + strand, within Shew_3423
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml remove 4,076,464 - Shew_3420 0.67 +1.0 4,076,562 - Shew_3420 0.74 -0.5 4,076,562 - Shew_3420 0.74 +0.1 4,076,790 - Shew_3420 0.89 -0.2 4,077,049 - Shew_3421 0.32 +0.3 4,078,589 - +0.4 4,078,897 - +0.2 4,078,970 + Shew_3423 0.16 +0.4
Or see this region's nucleotide sequence