Strain Fitness in Shewanella loihica PV-4 around Shew_2963

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2962 and Shew_2963 are separated by 210 nucleotidesShew_2963 and Shew_2964 are separated by 55 nucleotides Shew_2962: Shew_2962 - malate dehydrogenase (RefSeq), at 3,513,984 to 3,515,672 _2962 Shew_2963: Shew_2963 - hypothetical protein (RefSeq), at 3,515,883 to 3,516,347 _2963 Shew_2964: Shew_2964 - beta-lactamase (RefSeq), at 3,516,403 to 3,517,545 _2964 Position (kb) 3515 3516 3517Strain fitness (log2 ratio) -1 0 1 2 3at 3515.101 kb on - strand, within Shew_2962at 3515.101 kb on - strand, within Shew_2962at 3515.120 kb on - strand, within Shew_2962at 3515.431 kb on - strand, within Shew_2962at 3515.503 kb on - strand, within Shew_2962at 3515.817 kb on + strandat 3516.053 kb on + strand, within Shew_2963at 3516.181 kb on - strand, within Shew_2963at 3516.580 kb on - strand, within Shew_2964at 3516.604 kb on + strand, within Shew_2964at 3516.635 kb on - strand, within Shew_2964at 3516.766 kb on - strand, within Shew_2964at 3517.115 kb on - strand, within Shew_2964

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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3,515,101 - Shew_2962 0.66 +1.4
3,515,101 - Shew_2962 0.66 +3.0
3,515,120 - Shew_2962 0.67 +0.8
3,515,431 - Shew_2962 0.86 -0.7
3,515,503 - Shew_2962 0.90 +0.9
3,515,817 + -0.3
3,516,053 + Shew_2963 0.37 +0.2
3,516,181 - Shew_2963 0.64 +1.3
3,516,580 - Shew_2964 0.15 -0.1
3,516,604 + Shew_2964 0.18 +0.1
3,516,635 - Shew_2964 0.20 +0.2
3,516,766 - Shew_2964 0.32 +0.2
3,517,115 - Shew_2964 0.62 -0.2

Or see this region's nucleotide sequence