Strain Fitness in Shewanella loihica PV-4 around Shew_2499

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2498 and Shew_2499 overlap by 1 nucleotidesShew_2499 and Shew_2500 overlap by 14 nucleotidesShew_2500 and Shew_2501 are separated by 12 nucleotides Shew_2498: Shew_2498 - extracellular solute-binding protein (RefSeq), at 2,937,254 to 2,938,897 _2498 Shew_2499: Shew_2499 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,938,897 to 2,939,928 _2499 Shew_2500: Shew_2500 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,939,915 to 2,940,805 _2500 Shew_2501: Shew_2501 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,940,818 to 2,941,831 _2501 Position (kb) 2938 2939 2940Strain fitness (log2 ratio) -1 0 1 2at 2938.603 kb on - strand, within Shew_2498at 2939.756 kb on + strand, within Shew_2499at 2940.001 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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2,938,603 - Shew_2498 0.82 +1.3
2,939,756 + Shew_2499 0.83 +2.2
2,940,001 - +1.1

Or see this region's nucleotide sequence