Strain Fitness in Shewanella loihica PV-4 around Shew_2375

Experiment: Bacitracin 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2374 and Shew_2375 are separated by 63 nucleotidesShew_2375 and Shew_2376 are separated by 483 nucleotides Shew_2374: Shew_2374 - NAD-dependent epimerase/dehydratase (RefSeq), at 2,775,885 to 2,776,784 _2374 Shew_2375: Shew_2375 - metal dependent phosphohydrolase (RefSeq), at 2,776,848 to 2,778,071 _2375 Shew_2376: Shew_2376 - hypothetical protein (RefSeq), at 2,778,555 to 2,779,025 _2376 Position (kb) 2776 2777 2778 2779Strain fitness (log2 ratio) -1 0 1at 2775.853 kb on - strandat 2776.734 kb on - strandat 2776.910 kb on - strandat 2778.027 kb on + strandat 2778.514 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
remove
2,775,853 - +0.0
2,776,734 - -0.1
2,776,910 - +0.6
2,778,027 + +0.1
2,778,514 - +0.3

Or see this region's nucleotide sequence