Strain Fitness in Shewanella loihica PV-4 around Shew_1766

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1765 and Shew_1766 are separated by 342 nucleotidesShew_1766 and Shew_1767 are separated by 156 nucleotides Shew_1765: Shew_1765 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 2,017,409 to 2,018,545 _1765 Shew_1766: Shew_1766 - signal transduction protein (RefSeq), at 2,018,888 to 2,019,304 _1766 Shew_1767: Shew_1767 - ATP-dependent helicase HrpA (RefSeq), at 2,019,461 to 2,023,348 _1767 Position (kb) 2018 2019 2020Strain fitness (log2 ratio) -1 0 1at 2017.936 kb on - strand, within Shew_1765at 2017.956 kb on + strand, within Shew_1765at 2017.988 kb on - strand, within Shew_1765at 2018.451 kb on - strandat 2018.855 kb on - strandat 2018.997 kb on + strand, within Shew_1766at 2019.083 kb on - strand, within Shew_1766at 2019.085 kb on - strand, within Shew_1766at 2019.170 kb on + strand, within Shew_1766at 2019.217 kb on + strand, within Shew_1766at 2019.225 kb on - strand, within Shew_1766at 2019.466 kb on - strandat 2019.537 kb on - strandat 2020.087 kb on + strand, within Shew_1767at 2020.253 kb on + strand, within Shew_1767

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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2,017,936 - Shew_1765 0.46 -0.2
2,017,956 + Shew_1765 0.48 +0.4
2,017,988 - Shew_1765 0.51 +0.0
2,018,451 - +0.0
2,018,855 - +0.1
2,018,997 + Shew_1766 0.26 -0.4
2,019,083 - Shew_1766 0.47 -0.8
2,019,085 - Shew_1766 0.47 -0.3
2,019,170 + Shew_1766 0.68 +0.0
2,019,217 + Shew_1766 0.79 -0.1
2,019,225 - Shew_1766 0.81 -0.1
2,019,466 - +0.1
2,019,537 - +0.8
2,020,087 + Shew_1767 0.16 +0.1
2,020,253 + Shew_1767 0.20 +0.2

Or see this region's nucleotide sequence