Strain Fitness in Shewanella loihica PV-4 around Shew_1600

Experiment: Bacitracin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1598 and rpmF are separated by 17 nucleotidesrpmF and Shew_1600 are separated by 14 nucleotidesShew_1600 and Shew_1601 are separated by 9 nucleotides Shew_1598: Shew_1598 - hypothetical protein (RefSeq), at 1,831,732 to 1,832,256 _1598 Shew_1599: rpmF - 50S ribosomal protein L32 (RefSeq), at 1,832,274 to 1,832,444 rpmF Shew_1600: Shew_1600 - putative glycerol-3-phosphate acyltransferase PlsX (RefSeq), at 1,832,459 to 1,833,487 _1600 Shew_1601: Shew_1601 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 1,833,497 to 1,834,456 _1601 Position (kb) 1832 1833 1834Strain fitness (log2 ratio) -1 0 1at 1833.453 kb on + strandat 1833.931 kb on + strand, within Shew_1601

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.125 mg/ml
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1,833,453 + +1.5
1,833,931 + Shew_1601 0.45 +1.7

Or see this region's nucleotide sequence