Strain Fitness in Shewanella loihica PV-4 around Shew_1200

Experiment: Bacitracin 0.125 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Bacitracin 0.125 mg/ml
1,390,127	+				+0.5
1,390,648	+		Shew_1199	0.47	+0.5
1,390,670	-		Shew_1199	0.51	+0.0
1,390,979	+				+1.3
1,391,031	+				-2.1
1,391,937	+		Shew_1200	0.35	-3.0
1,391,937	+		Shew_1200	0.35	-4.2
1,392,638	-		Shew_1200	0.60	-3.0
1,392,830	-		Shew_1200	0.67	-2.5
1,393,205	+		Shew_1200	0.80	-1.9
1,393,234	-		Shew_1200	0.81	-2.5
1,393,513	-				-2.3
1,393,816	-				-0.6
1,393,860	-				-0.6
1,393,898	-				+0.6
1,394,062	+	rumA	Shew_1201	0.15	-0.4
1,394,229	-	rumA	Shew_1201	0.28	-0.6
1,394,535	-	rumA	Shew_1201	0.51	-0.6
1,394,642	-	rumA	Shew_1201	0.59	+0.0