Experiment: L-Aspartic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0596 and Dshi_0597 are separated by 183 nucleotides Dshi_0597 and Dshi_0598 are separated by 126 nucleotides Dshi_0598 and Dshi_0599 overlap by 4 nucleotides
Dshi_0596: Dshi_0596 - 2-isopropylmalate synthase (RefSeq), at 587,090 to 588,667
_0596
Dshi_0597: Dshi_0597 - hypothetical protein (RefSeq), at 588,851 to 589,648
_0597
Dshi_0598: Dshi_0598 - short-chain dehydrogenase/reductase SDR (RefSeq), at 589,775 to 590,440
_0598
Dshi_0599: Dshi_0599 - deoxyribodipyrimidine photolyase-related protein (RefSeq), at 590,437 to 591,963
_0599
Position (kb) 588
589
590 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 588.430 kb on + strand, within Dshi_0596 at 588.574 kb on + strand at 588.607 kb on - strand at 588.686 kb on + strand at 588.730 kb on - strand at 588.749 kb on + strand at 588.757 kb on - strand at 588.848 kb on + strand at 588.902 kb on - strand at 588.919 kb on + strand at 589.008 kb on + strand, within Dshi_0597 at 589.047 kb on - strand, within Dshi_0597 at 589.176 kb on - strand, within Dshi_0597 at 589.184 kb on - strand, within Dshi_0597 at 589.188 kb on - strand, within Dshi_0597 at 589.231 kb on - strand, within Dshi_0597 at 589.233 kb on + strand, within Dshi_0597 at 589.239 kb on + strand, within Dshi_0597 at 589.247 kb on + strand, within Dshi_0597 at 589.257 kb on + strand, within Dshi_0597 at 589.285 kb on + strand, within Dshi_0597 at 589.285 kb on + strand, within Dshi_0597 at 589.293 kb on - strand, within Dshi_0597 at 589.302 kb on - strand, within Dshi_0597 at 589.310 kb on - strand, within Dshi_0597 at 589.372 kb on + strand, within Dshi_0597 at 589.420 kb on + strand, within Dshi_0597 at 589.430 kb on + strand, within Dshi_0597 at 589.430 kb on + strand, within Dshi_0597 at 589.430 kb on + strand, within Dshi_0597 at 589.430 kb on + strand, within Dshi_0597 at 589.430 kb on + strand, within Dshi_0597 at 589.430 kb on + strand, within Dshi_0597 at 589.430 kb on + strand, within Dshi_0597 at 589.430 kb on + strand, within Dshi_0597 at 589.430 kb on + strand, within Dshi_0597 at 589.438 kb on - strand, within Dshi_0597 at 589.438 kb on - strand, within Dshi_0597 at 589.438 kb on - strand, within Dshi_0597 at 589.438 kb on - strand, within Dshi_0597 at 589.456 kb on + strand, within Dshi_0597 at 589.496 kb on - strand, within Dshi_0597 at 589.535 kb on + strand, within Dshi_0597 at 589.543 kb on - strand, within Dshi_0597 at 589.565 kb on + strand, within Dshi_0597 at 589.590 kb on - strand at 589.595 kb on + strand at 589.602 kb on + strand at 589.602 kb on + strand at 589.610 kb on - strand at 589.610 kb on - strand at 589.629 kb on + strand at 589.637 kb on - strand at 589.639 kb on - strand at 589.651 kb on - strand at 589.658 kb on - strand at 589.658 kb on - strand at 589.658 kb on - strand at 589.674 kb on + strand at 589.674 kb on + strand at 589.682 kb on - strand at 589.683 kb on - strand at 589.756 kb on + strand at 589.772 kb on + strand at 589.904 kb on + strand, within Dshi_0598 at 589.919 kb on + strand, within Dshi_0598 at 589.927 kb on - strand, within Dshi_0598 at 589.970 kb on - strand, within Dshi_0598 at 590.039 kb on - strand, within Dshi_0598 at 590.066 kb on + strand, within Dshi_0598 at 590.069 kb on - strand, within Dshi_0598 at 590.111 kb on - strand, within Dshi_0598 at 590.140 kb on + strand, within Dshi_0598 at 590.489 kb on - strand at 590.552 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (N) remove 588,430 + Dshi_0596 0.85 -1.5 588,574 + -0.7 588,607 - -1.2 588,686 + -0.1 588,730 - -0.6 588,749 + -0.0 588,757 - +0.7 588,848 + -0.2 588,902 - +0.1 588,919 + -0.0 589,008 + Dshi_0597 0.20 +0.2 589,047 - Dshi_0597 0.25 -1.0 589,176 - Dshi_0597 0.41 -0.1 589,184 - Dshi_0597 0.42 +1.0 589,188 - Dshi_0597 0.42 -0.2 589,231 - Dshi_0597 0.48 +2.0 589,233 + Dshi_0597 0.48 +0.6 589,239 + Dshi_0597 0.49 -1.7 589,247 + Dshi_0597 0.50 +0.2 589,257 + Dshi_0597 0.51 -0.2 589,285 + Dshi_0597 0.54 +0.6 589,285 + Dshi_0597 0.54 +0.3 589,293 - Dshi_0597 0.55 -0.2 589,302 - Dshi_0597 0.57 +0.2 589,310 - Dshi_0597 0.58 -0.4 589,372 + Dshi_0597 0.65 -0.2 589,420 + Dshi_0597 0.71 -0.3 589,430 + Dshi_0597 0.73 -0.0 589,430 + Dshi_0597 0.73 -1.0 589,430 + Dshi_0597 0.73 +0.2 589,430 + Dshi_0597 0.73 +0.4 589,430 + Dshi_0597 0.73 -0.3 589,430 + Dshi_0597 0.73 -0.4 589,430 + Dshi_0597 0.73 +0.3 589,430 + Dshi_0597 0.73 +0.5 589,430 + Dshi_0597 0.73 -1.2 589,438 - Dshi_0597 0.74 -1.4 589,438 - Dshi_0597 0.74 +0.6 589,438 - Dshi_0597 0.74 +0.9 589,438 - Dshi_0597 0.74 -0.1 589,456 + Dshi_0597 0.76 +0.3 589,496 - Dshi_0597 0.81 +0.7 589,535 + Dshi_0597 0.86 +1.3 589,543 - Dshi_0597 0.87 +0.9 589,565 + Dshi_0597 0.89 +0.0 589,590 - +0.3 589,595 + +0.9 589,602 + -0.4 589,602 + +0.5 589,610 - +1.2 589,610 - +0.2 589,629 + -1.5 589,637 - -0.3 589,639 - -1.0 589,651 - +0.3 589,658 - -2.7 589,658 - +0.3 589,658 - -0.5 589,674 + +0.7 589,674 + -0.5 589,682 - +0.6 589,683 - -0.2 589,756 + -0.3 589,772 + -0.5 589,904 + Dshi_0598 0.19 +0.0 589,919 + Dshi_0598 0.22 -0.7 589,927 - Dshi_0598 0.23 +0.3 589,970 - Dshi_0598 0.29 -0.7 590,039 - Dshi_0598 0.40 -0.7 590,066 + Dshi_0598 0.44 -0.5 590,069 - Dshi_0598 0.44 +1.3 590,111 - Dshi_0598 0.50 -0.5 590,140 + Dshi_0598 0.55 -1.0 590,489 - -0.0 590,552 + +2.8
Or see this region's nucleotide sequence