Experiment: L-Aspartic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0524 and Dshi_0525 are separated by 83 nucleotides Dshi_0525 and Dshi_0526 are separated by 27 nucleotides Dshi_0526 and Dshi_0527 overlap by 4 nucleotides
Dshi_0524: Dshi_0524 - aldo/keto reductase (RefSeq), at 508,895 to 509,974
_0524
Dshi_0525: Dshi_0525 - hypothetical protein (RefSeq), at 510,058 to 510,609
_0525
Dshi_0526: Dshi_0526 - Dak phosphatase (RefSeq), at 510,637 to 511,236
_0526
Dshi_0527: Dshi_0527 - Glycerone kinase (RefSeq), at 511,233 to 512,234
_0527
Position (kb)
510
511
512 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 509.691 kb on + strand, within Dshi_0524 at 509.696 kb on + strand, within Dshi_0524 at 509.860 kb on - strand, within Dshi_0524 at 509.876 kb on + strand at 509.897 kb on + strand at 509.912 kb on + strand at 509.963 kb on + strand at 509.976 kb on - strand at 509.976 kb on - strand at 509.977 kb on + strand at 510.029 kb on - strand at 510.120 kb on - strand, within Dshi_0525 at 510.168 kb on + strand, within Dshi_0525 at 510.186 kb on + strand, within Dshi_0525 at 510.192 kb on + strand, within Dshi_0525 at 510.192 kb on + strand, within Dshi_0525 at 510.192 kb on + strand, within Dshi_0525 at 510.202 kb on + strand, within Dshi_0525 at 510.210 kb on - strand, within Dshi_0525 at 510.219 kb on - strand, within Dshi_0525 at 510.280 kb on - strand, within Dshi_0525 at 510.280 kb on - strand, within Dshi_0525 at 510.339 kb on + strand, within Dshi_0525 at 510.571 kb on + strand at 510.579 kb on - strand at 510.611 kb on - strand at 510.628 kb on + strand at 510.656 kb on - strand at 510.689 kb on - strand at 510.772 kb on + strand, within Dshi_0526 at 510.780 kb on - strand, within Dshi_0526 at 510.786 kb on + strand, within Dshi_0526 at 510.787 kb on - strand, within Dshi_0526 at 510.796 kb on + strand, within Dshi_0526 at 510.796 kb on + strand, within Dshi_0526 at 510.799 kb on - strand, within Dshi_0526 at 510.844 kb on + strand, within Dshi_0526 at 510.867 kb on + strand, within Dshi_0526 at 510.885 kb on - strand, within Dshi_0526 at 510.905 kb on + strand, within Dshi_0526 at 510.905 kb on + strand, within Dshi_0526 at 510.920 kb on + strand, within Dshi_0526 at 510.981 kb on - strand, within Dshi_0526 at 511.029 kb on + strand, within Dshi_0526 at 511.034 kb on + strand, within Dshi_0526 at 511.140 kb on + strand, within Dshi_0526 at 511.154 kb on + strand, within Dshi_0526 at 511.162 kb on - strand, within Dshi_0526 at 511.165 kb on + strand, within Dshi_0526 at 511.246 kb on - strand at 511.265 kb on - strand at 511.307 kb on + strand at 511.307 kb on + strand at 511.315 kb on - strand at 511.317 kb on - strand at 511.373 kb on - strand, within Dshi_0527 at 511.397 kb on + strand, within Dshi_0527 at 511.397 kb on + strand, within Dshi_0527 at 511.405 kb on - strand, within Dshi_0527 at 511.407 kb on + strand, within Dshi_0527 at 511.407 kb on + strand, within Dshi_0527 at 511.417 kb on + strand, within Dshi_0527 at 511.424 kb on - strand, within Dshi_0527 at 511.436 kb on + strand, within Dshi_0527 at 511.436 kb on + strand, within Dshi_0527 at 511.540 kb on + strand, within Dshi_0527 at 511.540 kb on - strand, within Dshi_0527 at 511.542 kb on + strand, within Dshi_0527 at 511.566 kb on + strand, within Dshi_0527 at 511.598 kb on - strand, within Dshi_0527 at 511.631 kb on - strand, within Dshi_0527 at 511.645 kb on + strand, within Dshi_0527 at 511.645 kb on + strand, within Dshi_0527 at 511.693 kb on + strand, within Dshi_0527 at 511.719 kb on - strand, within Dshi_0527 at 511.761 kb on + strand, within Dshi_0527 at 511.841 kb on + strand, within Dshi_0527 at 511.875 kb on + strand, within Dshi_0527 at 511.934 kb on + strand, within Dshi_0527 at 512.016 kb on + strand, within Dshi_0527 at 512.121 kb on + strand, within Dshi_0527 at 512.129 kb on - strand, within Dshi_0527 at 512.190 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (N) remove 509,691 + Dshi_0524 0.74 -0.8 509,696 + Dshi_0524 0.74 -1.2 509,860 - Dshi_0524 0.89 -0.5 509,876 + +1.9 509,897 + -0.1 509,912 + -0.6 509,963 + +0.1 509,976 - +0.9 509,976 - +1.2 509,977 + -0.8 510,029 - +0.6 510,120 - Dshi_0525 0.11 +0.9 510,168 + Dshi_0525 0.20 +0.2 510,186 + Dshi_0525 0.23 +0.9 510,192 + Dshi_0525 0.24 +0.3 510,192 + Dshi_0525 0.24 +1.3 510,192 + Dshi_0525 0.24 -0.5 510,202 + Dshi_0525 0.26 +0.5 510,210 - Dshi_0525 0.28 +1.8 510,219 - Dshi_0525 0.29 +0.8 510,280 - Dshi_0525 0.40 -1.3 510,280 - Dshi_0525 0.40 +1.0 510,339 + Dshi_0525 0.51 -0.1 510,571 + -0.3 510,579 - -0.5 510,611 - +0.0 510,628 + +0.6 510,656 - -1.2 510,689 - +1.0 510,772 + Dshi_0526 0.23 +0.8 510,780 - Dshi_0526 0.24 +0.3 510,786 + Dshi_0526 0.25 +0.8 510,787 - Dshi_0526 0.25 +0.1 510,796 + Dshi_0526 0.27 -0.4 510,796 + Dshi_0526 0.27 -0.1 510,799 - Dshi_0526 0.27 +1.1 510,844 + Dshi_0526 0.34 +0.3 510,867 + Dshi_0526 0.38 +0.1 510,885 - Dshi_0526 0.41 +0.6 510,905 + Dshi_0526 0.45 +1.3 510,905 + Dshi_0526 0.45 -0.2 510,920 + Dshi_0526 0.47 +0.3 510,981 - Dshi_0526 0.57 +0.7 511,029 + Dshi_0526 0.65 +1.0 511,034 + Dshi_0526 0.66 -0.8 511,140 + Dshi_0526 0.84 +1.2 511,154 + Dshi_0526 0.86 +0.6 511,162 - Dshi_0526 0.88 -0.4 511,165 + Dshi_0526 0.88 -0.3 511,246 - -0.1 511,265 - -1.5 511,307 + +0.6 511,307 + +0.0 511,315 - -1.3 511,317 - -0.5 511,373 - Dshi_0527 0.14 -0.5 511,397 + Dshi_0527 0.16 +0.9 511,397 + Dshi_0527 0.16 -1.1 511,405 - Dshi_0527 0.17 +0.4 511,407 + Dshi_0527 0.17 -0.2 511,407 + Dshi_0527 0.17 -0.3 511,417 + Dshi_0527 0.18 +0.3 511,424 - Dshi_0527 0.19 +1.3 511,436 + Dshi_0527 0.20 +0.6 511,436 + Dshi_0527 0.20 -1.1 511,540 + Dshi_0527 0.31 +0.1 511,540 - Dshi_0527 0.31 +0.2 511,542 + Dshi_0527 0.31 +0.3 511,566 + Dshi_0527 0.33 +0.3 511,598 - Dshi_0527 0.36 -1.3 511,631 - Dshi_0527 0.40 -0.8 511,645 + Dshi_0527 0.41 +0.8 511,645 + Dshi_0527 0.41 -0.1 511,693 + Dshi_0527 0.46 -0.7 511,719 - Dshi_0527 0.49 +0.3 511,761 + Dshi_0527 0.53 -0.2 511,841 + Dshi_0527 0.61 +0.3 511,875 + Dshi_0527 0.64 -0.8 511,934 + Dshi_0527 0.70 +1.0 512,016 + Dshi_0527 0.78 -1.8 512,121 + Dshi_0527 0.89 +1.5 512,129 - Dshi_0527 0.89 -0.7 512,190 + -0.0
Or see this region's nucleotide sequence