Experiment: L-Aspartic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0484 and Dshi_0485 are separated by 49 nucleotides Dshi_0485 and Dshi_0486 are separated by 18 nucleotides Dshi_0486 and Dshi_0487 are separated by 565 nucleotides
Dshi_0484: Dshi_0484 - 40-residue YVTN family beta-propeller repeat protein (RefSeq), at 469,158 to 470,129
_0484
Dshi_0485: Dshi_0485 - hypothetical protein (RefSeq), at 470,179 to 470,616
_0485
Dshi_0486: Dshi_0486 - hypothetical protein (RefSeq), at 470,635 to 470,883
_0486
Dshi_0487: Dshi_0487 - hypothetical protein (RefSeq), at 471,449 to 472,675
_0487
Position (kb) 470
471 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 469.653 kb on - strand, within Dshi_0484 at 469.678 kb on - strand, within Dshi_0484 at 469.712 kb on - strand, within Dshi_0484 at 469.712 kb on - strand, within Dshi_0484 at 469.758 kb on + strand, within Dshi_0484 at 469.758 kb on + strand, within Dshi_0484 at 469.758 kb on + strand, within Dshi_0484 at 469.776 kb on + strand, within Dshi_0484 at 469.797 kb on + strand, within Dshi_0484 at 469.797 kb on + strand, within Dshi_0484 at 469.803 kb on + strand, within Dshi_0484 at 469.805 kb on - strand, within Dshi_0484 at 469.813 kb on + strand, within Dshi_0484 at 469.813 kb on + strand, within Dshi_0484 at 469.821 kb on - strand, within Dshi_0484 at 469.866 kb on - strand, within Dshi_0484 at 469.877 kb on + strand, within Dshi_0484 at 469.887 kb on - strand, within Dshi_0484 at 469.887 kb on - strand, within Dshi_0484 at 469.906 kb on - strand, within Dshi_0484 at 469.906 kb on - strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.939 kb on + strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.947 kb on - strand, within Dshi_0484 at 469.953 kb on + strand, within Dshi_0484 at 469.954 kb on + strand, within Dshi_0484 at 469.961 kb on - strand, within Dshi_0484 at 469.962 kb on - strand, within Dshi_0484 at 469.968 kb on + strand, within Dshi_0484 at 469.969 kb on - strand, within Dshi_0484 at 469.969 kb on - strand, within Dshi_0484 at 469.969 kb on - strand, within Dshi_0484 at 469.976 kb on - strand, within Dshi_0484 at 469.984 kb on - strand, within Dshi_0484 at 469.984 kb on - strand, within Dshi_0484 at 470.050 kb on - strand at 470.051 kb on + strand at 470.083 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on + strand at 470.102 kb on - strand at 470.110 kb on - strand at 470.110 kb on - strand at 470.111 kb on - strand at 470.148 kb on + strand at 470.161 kb on - strand at 470.187 kb on + strand at 470.187 kb on + strand at 470.195 kb on - strand at 470.195 kb on - strand at 470.195 kb on - strand at 470.196 kb on - strand at 470.198 kb on + strand at 470.203 kb on + strand at 470.206 kb on - strand at 470.223 kb on + strand, within Dshi_0485 at 470.223 kb on + strand, within Dshi_0485 at 470.244 kb on + strand, within Dshi_0485 at 470.279 kb on + strand, within Dshi_0485 at 470.289 kb on + strand, within Dshi_0485 at 470.314 kb on + strand, within Dshi_0485 at 470.317 kb on - strand, within Dshi_0485 at 470.322 kb on - strand, within Dshi_0485 at 470.344 kb on + strand, within Dshi_0485 at 470.352 kb on + strand, within Dshi_0485 at 470.390 kb on + strand, within Dshi_0485 at 470.396 kb on - strand, within Dshi_0485 at 470.482 kb on + strand, within Dshi_0485 at 470.482 kb on + strand, within Dshi_0485 at 470.497 kb on + strand, within Dshi_0485 at 470.507 kb on + strand, within Dshi_0485 at 470.516 kb on - strand, within Dshi_0485 at 470.557 kb on + strand, within Dshi_0485 at 470.557 kb on + strand, within Dshi_0485 at 470.562 kb on + strand, within Dshi_0485 at 470.565 kb on - strand, within Dshi_0485 at 470.590 kb on - strand at 470.601 kb on - strand at 470.621 kb on + strand at 470.637 kb on - strand at 470.644 kb on + strand at 470.644 kb on + strand at 470.644 kb on + strand at 470.662 kb on + strand, within Dshi_0486 at 470.683 kb on + strand, within Dshi_0486 at 470.696 kb on + strand, within Dshi_0486 at 470.704 kb on - strand, within Dshi_0486 at 470.715 kb on + strand, within Dshi_0486 at 470.721 kb on + strand, within Dshi_0486 at 470.723 kb on - strand, within Dshi_0486 at 470.723 kb on - strand, within Dshi_0486 at 470.728 kb on - strand, within Dshi_0486 at 470.775 kb on + strand, within Dshi_0486 at 470.777 kb on - strand, within Dshi_0486 at 470.792 kb on - strand, within Dshi_0486 at 470.794 kb on + strand, within Dshi_0486 at 470.795 kb on + strand, within Dshi_0486 at 470.797 kb on - strand, within Dshi_0486 at 470.818 kb on + strand, within Dshi_0486 at 470.826 kb on - strand, within Dshi_0486 at 470.826 kb on - strand, within Dshi_0486 at 470.826 kb on - strand, within Dshi_0486 at 470.826 kb on - strand, within Dshi_0486 at 470.853 kb on + strand, within Dshi_0486 at 470.853 kb on + strand, within Dshi_0486 at 470.853 kb on + strand, within Dshi_0486 at 470.859 kb on - strand at 470.861 kb on - strand at 470.861 kb on - strand at 470.861 kb on - strand at 470.873 kb on - strand at 470.875 kb on + strand at 470.876 kb on - strand at 470.883 kb on + strand at 470.883 kb on + strand at 470.897 kb on + strand at 470.898 kb on - strand at 470.903 kb on - strand at 470.905 kb on - strand at 470.919 kb on + strand at 470.919 kb on + strand at 470.919 kb on + strand at 470.919 kb on + strand at 470.919 kb on + strand at 470.920 kb on + strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.927 kb on - strand at 470.928 kb on - strand at 470.932 kb on + strand at 470.933 kb on - strand at 470.938 kb on + strand at 470.946 kb on + strand at 470.953 kb on - strand at 470.968 kb on + strand at 470.968 kb on + strand at 470.979 kb on + strand at 470.991 kb on - strand at 470.999 kb on + strand at 470.999 kb on + strand at 471.009 kb on - strand at 471.012 kb on + strand at 471.047 kb on + strand at 471.047 kb on + strand at 471.047 kb on + strand at 471.047 kb on + strand at 471.047 kb on + strand at 471.055 kb on - strand at 471.055 kb on - strand at 471.055 kb on - strand at 471.055 kb on - strand at 471.057 kb on + strand at 471.057 kb on + strand at 471.069 kb on + strand at 471.077 kb on - strand at 471.085 kb on + strand at 471.087 kb on + strand at 471.095 kb on - strand at 471.095 kb on - strand at 471.095 kb on - strand at 471.109 kb on - strand at 471.117 kb on + strand at 471.132 kb on + strand at 471.139 kb on - strand at 471.140 kb on - strand at 471.162 kb on + strand at 471.168 kb on + strand at 471.170 kb on - strand at 471.170 kb on - strand at 471.170 kb on - strand at 471.170 kb on - strand at 471.174 kb on + strand at 471.174 kb on + strand at 471.174 kb on + strand at 471.176 kb on + strand at 471.181 kb on + strand at 471.189 kb on - strand at 471.194 kb on + strand at 471.199 kb on + strand at 471.199 kb on + strand at 471.211 kb on + strand at 471.220 kb on + strand at 471.220 kb on + strand at 471.220 kb on + strand at 471.224 kb on - strand at 471.224 kb on - strand at 471.228 kb on - strand at 471.228 kb on - strand at 471.237 kb on + strand at 471.237 kb on + strand at 471.238 kb on + strand at 471.242 kb on + strand at 471.242 kb on + strand at 471.242 kb on + strand at 471.242 kb on + strand at 471.245 kb on - strand at 471.247 kb on - strand at 471.250 kb on - strand at 471.260 kb on - strand at 471.266 kb on - strand at 471.332 kb on - strand at 471.354 kb on - strand at 471.369 kb on - strand at 471.372 kb on + strand at 471.388 kb on - strand at 471.388 kb on - strand at 471.390 kb on + strand at 471.390 kb on + strand at 471.390 kb on + strand at 471.398 kb on - strand at 471.398 kb on - strand at 471.398 kb on - strand at 471.399 kb on - strand at 471.417 kb on + strand at 471.418 kb on - strand at 471.421 kb on - strand at 471.441 kb on + strand at 471.447 kb on + strand at 471.449 kb on - strand at 471.449 kb on - strand at 471.449 kb on - strand at 471.450 kb on + strand at 471.450 kb on + strand at 471.450 kb on + strand at 471.450 kb on + strand at 471.450 kb on + strand at 471.450 kb on + strand at 471.458 kb on - strand at 471.458 kb on - strand at 471.458 kb on - strand at 471.458 kb on - strand at 471.458 kb on - strand at 471.458 kb on - strand at 471.466 kb on + strand at 471.510 kb on + strand at 471.515 kb on + strand at 471.515 kb on + strand at 471.518 kb on - strand at 471.523 kb on + strand at 471.523 kb on - strand at 471.528 kb on - strand at 471.544 kb on + strand at 471.544 kb on + strand at 471.544 kb on + strand at 471.546 kb on - strand at 471.549 kb on + strand at 471.549 kb on + strand at 471.549 kb on + strand at 471.552 kb on - strand at 471.557 kb on - strand at 471.557 kb on - strand at 471.557 kb on - strand at 471.562 kb on - strand at 471.576 kb on + strand, within Dshi_0487 at 471.577 kb on + strand, within Dshi_0487 at 471.577 kb on + strand, within Dshi_0487 at 471.586 kb on - strand, within Dshi_0487 at 471.586 kb on - strand, within Dshi_0487 at 471.617 kb on - strand, within Dshi_0487 at 471.641 kb on + strand, within Dshi_0487 at 471.641 kb on + strand, within Dshi_0487 at 471.668 kb on + strand, within Dshi_0487 at 471.678 kb on + strand, within Dshi_0487 at 471.692 kb on - strand, within Dshi_0487 at 471.704 kb on + strand, within Dshi_0487 at 471.723 kb on + strand, within Dshi_0487 at 471.764 kb on + strand, within Dshi_0487 at 471.772 kb on - strand, within Dshi_0487 at 471.772 kb on - strand, within Dshi_0487 at 471.790 kb on - strand, within Dshi_0487 at 471.861 kb on - strand, within Dshi_0487
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (N) remove 469,653 - Dshi_0484 0.51 +1.9 469,678 - Dshi_0484 0.53 -0.2 469,712 - Dshi_0484 0.57 +1.1 469,712 - Dshi_0484 0.57 +0.9 469,758 + Dshi_0484 0.62 +0.5 469,758 + Dshi_0484 0.62 +0.6 469,758 + Dshi_0484 0.62 -1.0 469,776 + Dshi_0484 0.64 -2.4 469,797 + Dshi_0484 0.66 +1.3 469,797 + Dshi_0484 0.66 +3.3 469,803 + Dshi_0484 0.66 +0.3 469,805 - Dshi_0484 0.67 +0.1 469,813 + Dshi_0484 0.67 -0.5 469,813 + Dshi_0484 0.67 -0.2 469,821 - Dshi_0484 0.68 +0.0 469,866 - Dshi_0484 0.73 -0.2 469,877 + Dshi_0484 0.74 -0.2 469,887 - Dshi_0484 0.75 -0.9 469,887 - Dshi_0484 0.75 -0.2 469,906 - Dshi_0484 0.77 +0.2 469,906 - Dshi_0484 0.77 +0.3 469,939 + Dshi_0484 0.80 -0.6 469,939 + Dshi_0484 0.80 -0.7 469,939 + Dshi_0484 0.80 +0.6 469,939 + Dshi_0484 0.80 -0.4 469,939 + Dshi_0484 0.80 -0.6 469,939 + Dshi_0484 0.80 +1.0 469,939 + Dshi_0484 0.80 +0.5 469,939 + Dshi_0484 0.80 -0.8 469,939 + Dshi_0484 0.80 -0.7 469,939 + Dshi_0484 0.80 +0.4 469,939 + Dshi_0484 0.80 +0.8 469,939 + Dshi_0484 0.80 -1.8 469,939 + Dshi_0484 0.80 +0.3 469,939 + Dshi_0484 0.80 +0.0 469,947 - Dshi_0484 0.81 -1.8 469,947 - Dshi_0484 0.81 +1.6 469,947 - Dshi_0484 0.81 -0.6 469,947 - Dshi_0484 0.81 +1.0 469,947 - Dshi_0484 0.81 +0.0 469,947 - Dshi_0484 0.81 +0.0 469,947 - Dshi_0484 0.81 -0.5 469,947 - Dshi_0484 0.81 +0.3 469,947 - Dshi_0484 0.81 -0.4 469,947 - Dshi_0484 0.81 +0.1 469,947 - Dshi_0484 0.81 -1.1 469,953 + Dshi_0484 0.82 -0.5 469,954 + Dshi_0484 0.82 +0.2 469,961 - Dshi_0484 0.83 -0.1 469,962 - Dshi_0484 0.83 +0.1 469,968 + Dshi_0484 0.83 -1.3 469,969 - Dshi_0484 0.83 -0.6 469,969 - Dshi_0484 0.83 +0.4 469,969 - Dshi_0484 0.83 +0.3 469,976 - Dshi_0484 0.84 -1.2 469,984 - Dshi_0484 0.85 +1.0 469,984 - Dshi_0484 0.85 -0.7 470,050 - -0.5 470,051 + -0.3 470,083 + -0.3 470,102 + -0.9 470,102 + +1.5 470,102 + -0.7 470,102 + -0.5 470,102 + -1.1 470,102 + -0.5 470,102 + -0.6 470,102 + -1.5 470,102 + -0.7 470,102 - +0.9 470,110 - -0.8 470,110 - +0.5 470,111 - -0.6 470,148 + -1.4 470,161 - -0.4 470,187 + -0.5 470,187 + +0.1 470,195 - +0.5 470,195 - -0.5 470,195 - -0.2 470,196 - -0.7 470,198 + -1.7 470,203 + -1.2 470,206 - +0.4 470,223 + Dshi_0485 0.10 -1.0 470,223 + Dshi_0485 0.10 +0.3 470,244 + Dshi_0485 0.15 -0.3 470,279 + Dshi_0485 0.23 -0.6 470,289 + Dshi_0485 0.25 -2.5 470,314 + Dshi_0485 0.31 +0.8 470,317 - Dshi_0485 0.32 -0.8 470,322 - Dshi_0485 0.33 +0.7 470,344 + Dshi_0485 0.38 -1.3 470,352 + Dshi_0485 0.39 -0.6 470,390 + Dshi_0485 0.48 +0.6 470,396 - Dshi_0485 0.50 -0.0 470,482 + Dshi_0485 0.69 -0.3 470,482 + Dshi_0485 0.69 -0.6 470,497 + Dshi_0485 0.73 +0.1 470,507 + Dshi_0485 0.75 +0.3 470,516 - Dshi_0485 0.77 -1.9 470,557 + Dshi_0485 0.86 -0.7 470,557 + Dshi_0485 0.86 -0.1 470,562 + Dshi_0485 0.87 +0.6 470,565 - Dshi_0485 0.88 +0.8 470,590 - +0.1 470,601 - -1.7 470,621 + -0.3 470,637 - -0.7 470,644 + -0.4 470,644 + -1.0 470,644 + +0.7 470,662 + Dshi_0486 0.11 +0.8 470,683 + Dshi_0486 0.19 +0.2 470,696 + Dshi_0486 0.24 -0.2 470,704 - Dshi_0486 0.28 -0.5 470,715 + Dshi_0486 0.32 +0.3 470,721 + Dshi_0486 0.35 +0.7 470,723 - Dshi_0486 0.35 -0.2 470,723 - Dshi_0486 0.35 +0.2 470,728 - Dshi_0486 0.37 -0.4 470,775 + Dshi_0486 0.56 +1.2 470,777 - Dshi_0486 0.57 +0.0 470,792 - Dshi_0486 0.63 +2.4 470,794 + Dshi_0486 0.64 -0.4 470,795 + Dshi_0486 0.64 +0.6 470,797 - Dshi_0486 0.65 -0.1 470,818 + Dshi_0486 0.73 -0.1 470,826 - Dshi_0486 0.77 -0.2 470,826 - Dshi_0486 0.77 +1.3 470,826 - Dshi_0486 0.77 +0.5 470,826 - Dshi_0486 0.77 -0.7 470,853 + Dshi_0486 0.88 +0.2 470,853 + Dshi_0486 0.88 +0.7 470,853 + Dshi_0486 0.88 -0.7 470,859 - -0.2 470,861 - -0.3 470,861 - -0.0 470,861 - -0.2 470,873 - +0.0 470,875 + +0.0 470,876 - -0.5 470,883 + -1.1 470,883 + +0.4 470,897 + -0.3 470,898 - -0.2 470,903 - +2.7 470,905 - -0.0 470,919 + -1.0 470,919 + +0.6 470,919 + +0.7 470,919 + +0.5 470,919 + +0.8 470,920 + -2.2 470,927 - +1.3 470,927 - -0.1 470,927 - -0.7 470,927 - +0.7 470,927 - -1.1 470,927 - -0.7 470,927 - +1.1 470,927 - -0.4 470,927 - -0.9 470,927 - -1.1 470,928 - +0.1 470,932 + -1.1 470,933 - +0.2 470,938 + -0.1 470,946 + -0.8 470,953 - -0.8 470,968 + -0.2 470,968 + -0.1 470,979 + -0.5 470,991 - -0.7 470,999 + +0.2 470,999 + +2.0 471,009 - -0.5 471,012 + -0.3 471,047 + +0.2 471,047 + +0.5 471,047 + -0.2 471,047 + -0.3 471,047 + -0.3 471,055 - +0.3 471,055 - +0.1 471,055 - +0.3 471,055 - +0.2 471,057 + +0.3 471,057 + -0.2 471,069 + +0.3 471,077 - -0.7 471,085 + -0.4 471,087 + -0.6 471,095 - +0.9 471,095 - +0.7 471,095 - +0.3 471,109 - -0.7 471,117 + +0.4 471,132 + -1.0 471,139 - +0.1 471,140 - -0.2 471,162 + -1.5 471,168 + +0.3 471,170 - +0.0 471,170 - -1.0 471,170 - -1.1 471,170 - -1.7 471,174 + -0.3 471,174 + -0.6 471,174 + -0.7 471,176 + +0.3 471,181 + -0.4 471,189 - -0.5 471,194 + +0.8 471,199 + -1.1 471,199 + -0.3 471,211 + +0.0 471,220 + -0.2 471,220 + -0.9 471,220 + +0.4 471,224 - -0.4 471,224 - +0.8 471,228 - -0.1 471,228 - -0.7 471,237 + +0.2 471,237 + +0.6 471,238 + -0.5 471,242 + +0.0 471,242 + +1.7 471,242 + +0.2 471,242 + +0.4 471,245 - -1.2 471,247 - -0.2 471,250 - -0.1 471,260 - -1.3 471,266 - -0.2 471,332 - -0.5 471,354 - +0.1 471,369 - +1.3 471,372 + -0.1 471,388 - +0.3 471,388 - +0.1 471,390 + -1.7 471,390 + +0.7 471,390 + -0.4 471,398 - -0.1 471,398 - +0.4 471,398 - +0.5 471,399 - -0.4 471,417 + +0.5 471,418 - -0.6 471,421 - -0.1 471,441 + -0.1 471,447 + +0.0 471,449 - -0.9 471,449 - -0.2 471,449 - -0.3 471,450 + +0.8 471,450 + +0.1 471,450 + +0.9 471,450 + -0.9 471,450 + +1.0 471,450 + +0.3 471,458 - +0.3 471,458 - -0.8 471,458 - +0.8 471,458 - +0.0 471,458 - +1.1 471,458 - +0.2 471,466 + +2.3 471,510 + -0.2 471,515 + +0.3 471,515 + -0.8 471,518 - -0.2 471,523 + -0.3 471,523 - +0.3 471,528 - +0.4 471,544 + -1.0 471,544 + +0.3 471,544 + +1.8 471,546 - +0.1 471,549 + -0.2 471,549 + -0.2 471,549 + -0.0 471,552 - -0.3 471,557 - -1.0 471,557 - +1.2 471,557 - -1.3 471,562 - +0.9 471,576 + Dshi_0487 0.10 -0.3 471,577 + Dshi_0487 0.10 -0.2 471,577 + Dshi_0487 0.10 +0.4 471,586 - Dshi_0487 0.11 -0.3 471,586 - Dshi_0487 0.11 -1.2 471,617 - Dshi_0487 0.14 -0.3 471,641 + Dshi_0487 0.16 -0.2 471,641 + Dshi_0487 0.16 -0.8 471,668 + Dshi_0487 0.18 -0.1 471,678 + Dshi_0487 0.19 -0.8 471,692 - Dshi_0487 0.20 -0.6 471,704 + Dshi_0487 0.21 -0.2 471,723 + Dshi_0487 0.22 +0.2 471,764 + Dshi_0487 0.26 -0.6 471,772 - Dshi_0487 0.26 +0.9 471,772 - Dshi_0487 0.26 -0.6 471,790 - Dshi_0487 0.28 -0.5 471,861 - Dshi_0487 0.34 -0.6
Or see this region's nucleotide sequence