Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4275

Experiment: aerobic shaking 48 hr copy A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy A
5,633,678	+				+0.0
5,633,678	+				-1.4
5,633,731	-				+1.6
5,633,736	+				-3.2
5,633,750	+				-2.5
5,633,779	+				-0.7
5,633,783	+				+1.6
5,633,783	+				+0.6
5,633,784	-				-0.7
5,633,822	-				-1.0
5,633,846	+		BT4274	0.11	+0.2
5,633,859	+		BT4274	0.12	+0.1
5,633,894	+		BT4274	0.17	-1.6
5,633,923	+		BT4274	0.20	-1.2
5,633,940	+		BT4274	0.22	-1.4
5,633,987	+		BT4274	0.28	+1.3
5,633,988	-		BT4274	0.29	-1.0
5,633,988	-		BT4274	0.29	-0.4
5,634,007	-		BT4274	0.31	-3.2
5,634,049	+		BT4274	0.36	-0.4
5,634,056	-		BT4274	0.37	-2.5
5,634,094	+		BT4274	0.42	+0.0
5,634,145	+		BT4274	0.48	-1.4
5,634,177	+		BT4274	0.52	-1.5
5,634,177	+		BT4274	0.52	-1.0
5,634,181	+		BT4274	0.53	+1.6
5,634,226	-		BT4274	0.59	-0.2
5,634,316	-		BT4274	0.70	-2.0
5,634,323	+		BT4274	0.71	-0.9
5,634,356	+		BT4274	0.75	-2.2
5,634,406	+		BT4274	0.81	-1.4
5,634,415	+		BT4274	0.82	-1.6
5,634,415	+		BT4274	0.82	-1.9
5,634,437	+		BT4274	0.85	-2.7
5,634,437	+		BT4274	0.85	+1.3
5,634,458	-		BT4274	0.88	-2.9
5,634,507	-				-1.2
5,634,518	+				-1.4
5,634,519	-				+0.2
5,634,527	+				-1.6
5,634,527	+				-3.0
5,634,632	-				-1.6
5,634,632	-				-1.2
5,634,666	-				-1.2
5,634,672	+				-0.4
5,634,687	+				-1.2
5,634,710	+				-1.6
5,634,718	+				-0.8
5,634,719	-				-1.2
5,634,747	-		BT4275	0.11	-0.4
5,634,762	+		BT4275	0.13	+0.3
5,634,781	+		BT4275	0.15	-1.6
5,634,792	+		BT4275	0.17	-2.3
5,634,794	+		BT4275	0.17	-1.4
5,634,847	-		BT4275	0.24	+1.4
5,634,933	+		BT4275	0.35	-1.0
5,635,027	-		BT4275	0.48	+0.2
5,635,065	-		BT4275	0.53	+0.6
5,635,194	+		BT4275	0.70	-2.2
5,635,244	-		BT4275	0.76	-2.3
5,635,246	+		BT4275	0.77	-0.3
5,635,322	+		BT4275	0.87	-2.0
5,635,335	+		BT4275	0.88	+0.2
5,635,468	-				-0.4