Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4162

Experiment: aerobic shaking 48 hr copy A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy A
5,468,573	+				-2.7
5,468,625	+		BT4161	0.12	-2.0
5,468,654	+		BT4161	0.16	-2.1
5,468,827	+		BT4161	0.45	-2.3
5,469,036	-		BT4161	0.80	-2.6
5,469,144	+				+1.6
5,469,157	+				-2.8
5,469,185	-				-2.6
5,469,216	+				-0.8
5,469,220	-				-0.7
5,469,220	-				-0.4
5,469,228	+				-2.6
5,469,231	+				+1.2
5,469,238	-				-3.3
5,469,260	-				-1.8
5,469,265	-				-0.8
5,469,314	-				-0.4
5,469,339	+				-2.1
5,469,393	-				-2.5
5,469,397	+				+1.6
5,469,439	-				-1.4
5,469,548	-				-2.4
5,469,663	-				-0.4
5,469,752	-				-0.0
5,469,752	-				-0.4
5,469,803	-		BT4162	0.11	-1.0
5,469,806	+		BT4162	0.11	-0.7
5,469,806	+		BT4162	0.11	-0.6
5,469,897	-		BT4162	0.16	-1.1
5,469,909	-		BT4162	0.16	-1.3
5,469,938	-		BT4162	0.18	-2.7
5,469,966	-		BT4162	0.19	-0.8
5,470,015	-				-1.4
5,470,239	+		BT4162	0.32	-1.3
5,470,240	-		BT4162	0.32	-0.0
5,470,346	-		BT4162	0.37	-1.8
5,470,459	+		BT4162	0.43	-0.4
5,470,460	-		BT4162	0.43	-0.4
5,470,522	-		BT4162	0.46	-2.4
5,470,547	+		BT4162	0.47	-1.0
5,470,578	-		BT4162	0.48	-1.0
5,470,585	+		BT4162	0.49	-3.7
5,470,586	-		BT4162	0.49	-0.6
5,470,586	-		BT4162	0.49	-0.8
5,470,661	+		BT4162	0.52	-2.4
5,470,662	-		BT4162	0.53	-1.7
5,470,738	+		BT4162	0.56	-1.0
5,470,747	-		BT4162	0.57	-0.3
5,470,882	+		BT4162	0.63	-0.0
5,470,883	-		BT4162	0.63	+0.1
5,470,923	-		BT4162	0.65	-1.4
5,470,923	-		BT4162	0.65	+1.6
5,471,008	-		BT4162	0.69	-3.7
5,471,015	+		BT4162	0.70	-2.7
5,471,053	-		BT4162	0.71	-1.8
5,471,129	+		BT4162	0.75	+1.6
5,471,196	+		BT4162	0.78	-1.3
5,471,265	-		BT4162	0.82	-1.0
5,471,314	-		BT4162	0.84	+1.1
5,471,325	+		BT4162	0.84	-2.8
5,471,325	+		BT4162	0.84	-1.9
5,471,325	+		BT4162	0.84	-1.7
5,471,337	-		BT4162	0.85	+0.6
5,471,337	-		BT4162	0.85	+0.4
5,471,340	+		BT4162	0.85	-2.0
5,471,449	-				-3.3
5,471,490	+				-2.4
5,471,494	+				-3.1
5,471,494	+				-2.0
5,471,495	-				+0.2
5,471,517	+				-0.8
5,471,628	+				-2.3
5,471,629	-				-0.3
5,471,646	+				-0.4
5,471,646	+				-2.6
5,471,647	-				-2.6
5,471,693	-				-2.4
5,471,703	+				-2.5
5,471,714	+				-1.4
5,471,727	+				-0.2
5,471,809	+				-0.9
5,471,858	+				+0.6
5,471,859	-				-2.0
5,471,973	-				-1.3
5,472,011	-				-1.7
5,472,043	+				+0.3
5,472,111	-				-0.8
5,472,164	-				+0.7
5,472,178	+				-1.4
5,472,178	+				+0.3
5,472,244	+				-2.4
5,472,245	-				-1.5
5,472,245	-				-1.3
5,472,301	-				-1.3
5,472,363	-				-2.0
5,472,405	-				-2.8
5,472,411	-				-0.7
5,472,422	+				+0.6
5,472,423	-				-2.1
5,472,489	+				-3.1
5,472,507	-				-2.1
5,472,509	-				-1.6
5,472,553	-		BT4163	0.12	+0.4
5,472,562	-		BT4163	0.12	-1.4
5,472,563	+		BT4163	0.12	-0.6
5,472,646	+		BT4163	0.16	-1.4