Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3790

Experiment: aerobic shaking 48 hr copy A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy A
4,923,001	+		BT3789	0.52	-1.4
4,923,004	+		BT3789	0.53	-0.8
4,923,028	-		BT3789	0.54	-0.4
4,923,040	-		BT3789	0.54	-2.8
4,923,057	+		BT3789	0.55	-2.1
4,923,058	-		BT3789	0.55	+0.5
4,923,058	-		BT3789	0.55	-0.5
4,923,058	-		BT3789	0.55	-1.3
4,923,058	-		BT3789	0.55	-0.8
4,923,079	+		BT3789	0.56	-0.4
4,923,086	+		BT3789	0.57	+1.1
4,923,137	+		BT3789	0.59	-0.1
4,923,137	+		BT3789	0.59	-0.8
4,923,178	+		BT3789	0.61	-0.8
4,923,196	+		BT3789	0.62	-0.3
4,923,202	+		BT3789	0.63	+0.0
4,923,208	+		BT3789	0.63	-0.1
4,923,209	-		BT3789	0.63	+6.2
4,923,209	-		BT3789	0.63	-1.0
4,923,237	-		BT3789	0.64	-2.7
4,923,245	-		BT3789	0.65	-2.3
4,923,251	+		BT3789	0.65	-0.8
4,923,254	-		BT3789	0.65	+0.1
4,923,318	-		BT3789	0.68	-1.6
4,923,341	-		BT3789	0.70	-1.8
4,923,357	+		BT3789	0.70	-0.1
4,923,371	-		BT3789	0.71	+0.6
4,923,395	+				+1.5
4,923,396	-		BT3789	0.72	-1.4
4,923,398	-		BT3789	0.72	+1.2
4,923,428	+		BT3789	0.74	+0.7
4,923,429	-		BT3789	0.74	-1.0
4,923,429	-		BT3789	0.74	-0.6
4,923,495	+		BT3789	0.77	-1.5
4,923,522	-		BT3789	0.79	+1.5
4,923,528	+		BT3789	0.79	-0.5
4,923,529	-		BT3789	0.79	-1.1
4,923,553	-		BT3789	0.80	-1.1
4,923,589	+		BT3789	0.82	-0.5
4,923,657	-		BT3789	0.86	-1.5
4,923,713	-		BT3789	0.88	-0.8
4,923,769	-				-0.7
4,923,787	+				-0.8
4,923,793	+				+0.3
4,923,805	+				+1.5
4,923,809	+				-0.5
4,923,850	-				-0.7
4,923,853	+				-1.3
4,923,875	+				-0.5
4,923,879	+				+1.7
4,923,954	-				+0.6
4,923,961	+				-0.9
4,923,980	-				-2.9
4,924,002	+				-1.7
4,924,132	+		BT3790	0.17	-0.8
4,924,134	+		BT3790	0.18	-1.1
4,924,134	+		BT3790	0.18	-2.8
4,924,137	+		BT3790	0.18	+1.5
4,924,146	-		BT3790	0.19	+1.3
4,924,154	-		BT3790	0.20	-0.5
4,924,177	+		BT3790	0.22	-2.2
4,924,178	-		BT3790	0.22	+0.3
4,924,178	-		BT3790	0.22	-0.9
4,924,198	-		BT3790	0.24	-0.5
4,924,198	-		BT3790	0.24	-1.1
4,924,203	+		BT3790	0.25	-0.8
4,924,204	-		BT3790	0.25	-0.0
4,924,229	-		BT3790	0.27	-0.2
4,924,266	+		BT3790	0.31	+0.5
4,924,316	-		BT3790	0.36	-0.8
4,924,333	-		BT3790	0.38	-1.5
4,924,346	+		BT3790	0.39	-0.2
4,924,347	-		BT3790	0.39	+0.7
4,924,349	-		BT3790	0.40	+1.5
4,924,349	-		BT3790	0.40	-1.4
4,924,351	-		BT3790	0.40	+0.9
4,924,400	+		BT3790	0.45	-0.5
4,924,401	-		BT3790	0.45	+0.6
4,924,401	-		BT3790	0.45	-0.3
4,924,404	+		BT3790	0.45	+1.5
4,924,404	+		BT3790	0.45	-1.0
4,924,457	+		BT3790	0.51	-1.1
4,924,468	-		BT3790	0.52	-0.1
4,924,478	-		BT3790	0.53	-1.3
4,924,478	-		BT3790	0.53	+0.1
4,924,478	-		BT3790	0.53	+2.6
4,924,509	-		BT3790	0.56	-0.8
4,924,528	-		BT3790	0.58	-1.1
4,924,573	+		BT3790	0.63	+1.5
4,924,574	-		BT3790	0.63	-0.7
4,924,577	+		BT3790	0.63	+0.5
4,924,578	-		BT3790	0.63	-0.1
4,924,578	-		BT3790	0.63	+0.5
4,924,583	-		BT3790	0.64	+0.8
4,924,594	+		BT3790	0.65	-1.7
4,924,595	-		BT3790	0.65	-0.4
4,924,601	+		BT3790	0.66	-0.7
4,924,602	-		BT3790	0.66	-0.1
4,924,604	-		BT3790	0.66	-2.1
4,924,648	-		BT3790	0.70	-2.0
4,924,653	-		BT3790	0.71	-2.1
4,924,653	-		BT3790	0.71	+2.1
4,924,653	-		BT3790	0.71	-0.3
4,924,688	-		BT3790	0.74	-1.1
4,924,788	-		BT3790	0.85	-0.7
4,924,790	-		BT3790	0.85	-1.1
4,924,790	-		BT3790	0.85	-0.1
4,924,790	-		BT3790	0.85	-2.0
4,924,824	-		BT3790	0.88	-2.0
4,924,824	-		BT3790	0.88	+1.1
4,924,840	+				+1.5
4,924,841	-				-1.1
4,924,843	+				+1.5
4,924,844	-				-2.0
4,924,844	-				-1.7
4,924,888	+				-1.3
4,924,896	+				-1.5
4,924,959	+				-1.7
4,925,007	-				+0.3
4,925,024	+				-2.1
4,925,025	-				-1.5
4,925,030	+				+0.2
4,925,049	-				+0.5
4,925,060	+				-0.8
4,925,061	-				-1.0
4,925,114	-				+0.5
4,925,114	-				-3.9
4,925,125	+				+1.5
4,925,125	+				-1.6
4,925,126	-				-1.7
4,925,126	-				+0.6
4,925,171	+		BT3791	0.10	-2.4
4,925,191	-		BT3791	0.11	-1.6
4,925,218	+		BT3791	0.13	-1.8
4,925,218	+		BT3791	0.13	-0.1
4,925,219	-		BT3791	0.13	+1.5
4,925,273	+		BT3791	0.16	-0.1
4,925,273	+		BT3791	0.16	-2.4
4,925,274	-		BT3791	0.16	+0.2
4,925,274	-		BT3791	0.16	-0.5
4,925,274	-		BT3791	0.16	-0.9
4,925,277	-		BT3791	0.16	+0.7
4,925,296	-		BT3791	0.18	-1.0
4,925,296	-		BT3791	0.18	-0.8
4,925,296	-		BT3791	0.18	-0.5
4,925,296	-		BT3791	0.18	-0.8
4,925,307	-		BT3791	0.18	-0.6
4,925,311	-		BT3791	0.19	-0.3
4,925,430	+		BT3791	0.26	-0.1
4,925,431	-		BT3791	0.26	+0.0
4,925,431	-		BT3791	0.26	-2.1
4,925,499	-		BT3791	0.30	+0.9
4,925,546	+		BT3791	0.33	-1.1
4,925,564	+		BT3791	0.34	-1.1
4,925,565	-		BT3791	0.34	-2.1
4,925,565	-		BT3791	0.34	-1.4
4,925,664	-		BT3791	0.40	-1.5
4,925,710	-		BT3791	0.43	-1.6
4,925,762	+		BT3791	0.46	-0.1
4,925,843	+		BT3791	0.51	-0.1
4,925,844	-		BT3791	0.51	-0.1
4,925,877	+		BT3791	0.53	-2.0
4,925,899	-		BT3791	0.54	-2.0