Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1931

Experiment: aerobic shaking 48 hr copy A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy A
2,422,778	-				+1.6
2,422,896	+				-1.0
2,423,040	+				-1.2
2,423,126	-				-1.1
2,423,159	-				-1.2
2,423,403	-				+0.4
2,423,423	-				-0.7
2,423,494	-				-1.5
2,423,507	-				+1.2
2,423,515	-				-0.4
2,423,516	+				-1.7
2,423,523	+				+0.1
2,423,523	+				+1.2
2,423,523	+				-1.8
2,423,524	-				-3.3
2,423,540	+				-0.7
2,423,600	-				-2.0
2,423,626	+				-0.9
2,423,666	+				-0.9
2,423,674	+				-1.7
2,423,706	+				+0.1
2,423,707	-				-0.9
2,423,778	-				-0.4
2,423,844	+				-1.1
2,423,856	+				+0.6
2,423,856	+				-0.4
2,423,856	+				+0.9
2,423,857	-				-1.5
2,423,907	-				-3.5
2,423,939	-				-0.9
2,423,946	-				+0.1
2,423,973	-				-1.7
2,423,985	-				-4.0
2,424,014	-				+0.3
2,424,015	+				-0.4
2,424,015	+				-1.1
2,424,015	+				-0.9
2,424,015	+				-1.5
2,424,015	+				-0.7
2,424,016	-				-1.0
2,424,018	+				+0.4
2,424,038	+		BT1931	0.11	-1.9
2,424,039	-		BT1931	0.11	-0.4
2,424,056	+		BT1931	0.11	+0.3
2,424,061	-		BT1931	0.11	+0.1
2,424,074	+		BT1931	0.12	-2.5
2,424,074	+		BT1931	0.12	-1.5
2,424,077	+		BT1931	0.12	-0.9
2,424,142	+		BT1931	0.13	-0.1
2,424,143	-		BT1931	0.13	+0.1
2,424,143	-		BT1931	0.13	+0.1
2,424,246	-		BT1931	0.16	-2.8
2,424,255	+		BT1931	0.17	-1.7
2,424,256	-		BT1931	0.17	-0.9
2,424,262	-		BT1931	0.17	-1.4
2,424,279	+		BT1931	0.17	-1.6
2,424,279	+		BT1931	0.17	-1.8
2,424,296	+		BT1931	0.18	-0.8
2,424,296	+		BT1931	0.18	-1.7
2,424,308	+		BT1931	0.18	-1.9
2,424,338	+		BT1931	0.19	-1.6
2,424,344	-		BT1931	0.19	-3.3
2,424,354	-		BT1931	0.19	-1.8
2,424,425	-		BT1931	0.21	-1.1
2,424,425	-		BT1931	0.21	+0.4
2,424,462	-		BT1931	0.23	-0.5
2,424,515	-		BT1931	0.24	-1.9
2,424,521	+		BT1931	0.24	+0.1
2,424,521	-		BT1931	0.24	+0.6
2,424,562	+		BT1931	0.25	-2.8
2,424,562	+		BT1931	0.25	-1.5
2,424,563	-		BT1931	0.25	-1.5
2,424,563	-		BT1931	0.25	-2.2
2,424,588	+		BT1931	0.26	-0.7
2,424,626	+		BT1931	0.27	-0.7
2,424,629	+		BT1931	0.27	-2.7
2,424,721	+		BT1931	0.30	+0.1
2,424,739	-		BT1931	0.30	+0.3
2,424,739	-		BT1931	0.30	-1.9
2,424,882	-		BT1931	0.34	-1.8
2,424,905	+		BT1931	0.35	-0.5
2,424,906	-		BT1931	0.35	+1.1
2,424,910	+		BT1931	0.35	-1.6
2,424,911	-		BT1931	0.35	-0.6
2,424,911	-		BT1931	0.35	+1.2
2,424,934	+		BT1931	0.36	-0.9
2,424,934	+		BT1931	0.36	+0.0
2,424,935	-		BT1931	0.36	-1.2
2,424,959	-		BT1931	0.37	+1.6
2,424,988	-		BT1931	0.37	-0.7
2,425,012	-		BT1931	0.38	-2.7
2,425,013	+		BT1931	0.38	-1.4
2,425,014	-		BT1931	0.38	+0.1
2,425,090	+		BT1931	0.40	-0.8
2,425,090	+		BT1931	0.40	-0.4
2,425,229	+		BT1931	0.44	-1.5
2,425,240	-		BT1931	0.45	-0.2
2,425,240	-		BT1931	0.45	-0.4
2,425,280	+		BT1931	0.46	-1.7
2,425,479	+		BT1931	0.51	-0.9
2,425,572	-		BT1931	0.54	+0.6
2,425,635	+		BT1931	0.56	-2.5
2,425,638	+		BT1931	0.56	-1.5
2,425,639	-		BT1931	0.56	-0.4
2,425,662	+		BT1931	0.56	-1.8
2,425,662	+		BT1931	0.56	-2.2
2,425,691	+		BT1931	0.57	-1.5
2,425,743	-		BT1931	0.59	-1.2
2,425,743	-		BT1931	0.59	-0.9
2,425,766	+		BT1931	0.59	+1.6
2,425,766	+		BT1931	0.59	-2.1
2,425,770	-		BT1931	0.60	-0.9
2,425,787	+		BT1931	0.60	-1.6
2,425,787	+		BT1931	0.60	-1.5
2,425,788	-		BT1931	0.60	-1.8
2,425,808	+		BT1931	0.61	-2.6
2,425,853	+		BT1931	0.62	-1.2
2,425,948	+		BT1931	0.65	-0.7
2,425,948	+		BT1931	0.65	+0.6
2,426,038	+		BT1931	0.67	+0.7
2,426,046	-		BT1931	0.67	-2.4
2,426,059	+		BT1931	0.68	+0.4
2,426,059	+		BT1931	0.68	-0.2
2,426,116	+		BT1931	0.69	+0.3
2,426,154	-		BT1931	0.70	+0.6
2,426,213	-		BT1931	0.72	-1.5
2,426,213	-		BT1931	0.72	-0.7
2,426,226	+		BT1931	0.72	+0.1
2,426,226	+		BT1931	0.72	-0.1
2,426,227	-		BT1931	0.73	-2.6
2,426,231	-		BT1931	0.73	-0.4
2,426,235	+		BT1931	0.73	+0.1
2,426,235	+		BT1931	0.73	+0.9
2,426,236	-		BT1931	0.73	-2.2
2,426,236	-		BT1931	0.73	+0.3
2,426,269	-		BT1931	0.74	-3.1
2,426,291	+		BT1931	0.74	-1.7
2,426,314	-		BT1931	0.75	-2.1
2,426,315	+		BT1931	0.75	-0.6
2,426,315	+		BT1931	0.75	-0.7
2,426,316	-		BT1931	0.75	-1.8
2,426,441	-		BT1931	0.79	+0.1
2,426,450	+		BT1931	0.79	+0.6
2,426,580	-		BT1931	0.82	-0.6
2,426,593	+		BT1931	0.83	+0.8
2,426,593	+		BT1931	0.83	-0.7
2,426,644	+				-0.4
2,426,684	-		BT1931	0.85	-1.7
2,426,708	+		BT1931	0.86	-0.8
2,426,737	+		BT1931	0.87	-1.8
2,426,737	+		BT1931	0.87	-2.0
2,426,829	+		BT1931	0.90	-0.4
2,426,852	+				-1.2
2,426,852	+				-2.2
2,426,884	+				-1.4
2,426,884	+				+0.6
2,427,026	+				+0.1
2,427,028	-				-1.4
2,427,102	+				-0.7
2,427,117	+				-1.4
2,427,121	+				-0.7
2,427,138	+				+0.6
2,427,139	-				+0.1
2,427,140	+				-1.5
2,427,192	-				+0.3
2,427,217	+				-0.2
2,427,254	-		BT1932	0.13	-1.5
2,427,256	-		BT1932	0.13	-1.1
2,427,265	-		BT1932	0.14	-1.8
2,427,275	+		BT1932	0.16	+0.6
2,427,286	-		BT1932	0.17	-1.2
2,427,286	-		BT1932	0.17	-0.1
2,427,305	+		BT1932	0.20	-1.9
2,427,305	+		BT1932	0.20	-1.5
2,427,350	+		BT1932	0.26	-0.9
2,427,350	+		BT1932	0.26	+1.1
2,427,355	+		BT1932	0.27	-0.7
2,427,355	+		BT1932	0.27	-2.3
2,427,356	-		BT1932	0.27	-3.9
2,427,425	-		BT1932	0.37	-0.8
2,427,770	+		BT1932	0.86	-1.7
2,427,824	-				+0.1
2,427,968	+				+0.1
2,427,978	-				-1.8
2,427,987	+				-1.2
2,427,988	-				-1.5
2,428,043	+				+0.3
2,428,044	-				-2.5
2,428,044	-				-1.6
2,428,071	+				-1.4
2,428,072	-				+0.1
2,428,073	+				-1.0
2,428,074	-				-1.2
2,428,082	+				-3.4
2,428,142	-		BT1933	0.29	-2.2
2,428,142	-		BT1933	0.29	-0.2
2,428,171	+		BT1933	0.40	-1.2
2,428,172	-		BT1933	0.40	-1.3
2,428,172	-		BT1933	0.40	-1.2