Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1660

Experiment: aerobic shaking 48 hr copy A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	aerobic shaking 48 hr copy A
2,050,387	-		BT1659	0.20	-2.0
2,050,388	+		BT1659	0.20	-0.3
2,050,389	-		BT1659	0.20	-2.2
2,050,540	-		BT1659	0.35	+1.7
2,050,615	-		BT1659	0.42	+0.3
2,050,688	-		BT1659	0.49	-3.7
2,050,781	-		BT1659	0.58	-2.0
2,050,794	-		BT1659	0.59	-0.6
2,050,893	+		BT1659	0.68	+0.1
2,050,893	+		BT1659	0.68	-0.6
2,050,908	+		BT1659	0.70	-1.3
2,050,908	+		BT1659	0.70	+0.7
2,050,938	+		BT1659	0.73	-2.3
2,051,028	-		BT1659	0.81	-2.0
2,051,057	-		BT1659	0.84	-3.3
2,051,085	+		BT1659	0.87	-1.6
2,051,137	+				-1.2
2,051,141	+				-1.3
2,051,154	+				-0.5
2,051,154	+				-2.1
2,051,155	-				-2.0
2,051,155	-				-1.9
2,051,186	+				+0.1
2,051,187	-				+0.1
2,051,196	+				-1.4
2,051,233	-				-0.3
2,051,245	+				-1.1
2,051,257	+				+0.1
2,051,259	+				-1.7
2,051,259	+				-0.3
2,051,347	+				-1.1
2,051,389	+		BT1660	0.15	-0.3
2,051,390	-		BT1660	0.15	-1.9
2,051,424	-		BT1660	0.20	+0.1
2,051,439	-		BT1660	0.22	-2.0
2,051,499	-		BT1660	0.30	-0.8
2,051,525	+		BT1660	0.33	-1.1
2,051,667	+		BT1660	0.52	-3.2
2,051,667	+		BT1660	0.52	-3.1
2,051,668	-		BT1660	0.52	-1.3
2,051,670	-		BT1660	0.53	+0.1
2,051,733	-		BT1660	0.61	-0.9
2,051,814	-		BT1660	0.72	-1.3
2,051,864	-		BT1660	0.79	-3.2
2,051,947	-		BT1660	0.90	-1.1
2,052,006	+				-2.1
2,052,007	-				-0.6
2,052,050	-				-0.3
2,052,051	+				-2.6
2,052,055	+				-1.1
2,052,100	+				-0.3
2,052,142	-				+0.1
2,052,188	+				-0.4
2,052,300	+				-1.0
2,052,337	+				+0.8
2,052,405	-				+0.7
2,052,407	+				-1.5
2,052,408	-				-1.1
2,052,453	+		BT1661	0.10	+1.3
2,052,612	-		BT1661	0.19	+0.6
2,052,630	-		BT1661	0.20	-3.7
2,052,657	+		BT1661	0.22	-0.6
2,052,659	+		BT1661	0.22	-0.1
2,052,714	-		BT1661	0.25	-1.1
2,052,797	+		BT1661	0.30	+1.7
2,052,849	+		BT1661	0.32	-1.8
2,052,850	-		BT1661	0.32	-0.1
2,052,852	+		BT1661	0.33	-1.6
2,052,946	+		BT1661	0.38	-1.8
2,052,947	-		BT1661	0.38	-1.1
2,052,952	+		BT1661	0.38	-4.1
2,052,952	+		BT1661	0.38	-1.1
2,052,956	+				+2.3
2,052,956	+		BT1661	0.38	-0.1
2,052,957	-		BT1661	0.38	+0.5
2,052,957	-		BT1661	0.38	+0.1