Experiment: aerobic shaking 48 hr copy A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0032 and BT0033 are separated by 273 nucleotides BT0033 and BT0034 are separated by 310 nucleotides BT0034 and BT0035 are separated by 442 nucleotides BT0035 and BT0036 are separated by 176 nucleotides
BT0032: BT0032 - hypothetical protein (NCBI ptt file), at 29,209 to 29,406
BT0032
BT0033: BT0033 - hypothetical protein (NCBI ptt file), at 29,680 to 29,970
BT0033
BT0034: BT0034 - hypothetical protein (NCBI ptt file), at 30,281 to 31,492
BT0034
BT0035: BT0035 - hypothetical protein (NCBI ptt file), at 31,935 to 32,138
BT0035
BT0036: BT0036 - integrase (NCBI ptt file), at 32,315 to 33,526
BT0036
Position (kb) 30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 29.303 kb on + strand, within BT0032 at 29.304 kb on - strand, within BT0032 at 29.405 kb on - strand at 29.409 kb on + strand at 29.409 kb on + strand at 29.466 kb on + strand at 29.467 kb on - strand at 29.539 kb on + strand at 29.540 kb on - strand at 29.545 kb on + strand at 29.550 kb on + strand at 29.608 kb on - strand at 29.608 kb on - strand at 29.609 kb on + strand at 29.635 kb on - strand at 29.663 kb on + strand at 29.679 kb on + strand at 29.727 kb on + strand, within BT0033 at 29.728 kb on - strand, within BT0033 at 29.819 kb on + strand, within BT0033 at 29.886 kb on + strand, within BT0033 at 29.892 kb on - strand, within BT0033 at 29.910 kb on - strand, within BT0033 at 29.955 kb on + strand at 29.955 kb on + strand at 29.973 kb on + strand at 30.009 kb on + strand at 30.039 kb on + strand at 30.069 kb on - strand at 30.139 kb on + strand at 30.145 kb on + strand at 30.234 kb on + strand at 30.335 kb on - strand at 30.363 kb on - strand at 30.699 kb on + strand, within BT0034 at 30.700 kb on - strand, within BT0034 at 30.700 kb on - strand, within BT0034 at 30.749 kb on + strand, within BT0034 at 30.793 kb on + strand, within BT0034 at 30.804 kb on + strand at 30.872 kb on - strand, within BT0034 at 30.876 kb on + strand, within BT0034 at 31.081 kb on - strand, within BT0034 at 31.132 kb on + strand, within BT0034 at 31.133 kb on - strand, within BT0034 at 31.194 kb on - strand, within BT0034 at 31.201 kb on + strand, within BT0034 at 31.202 kb on - strand, within BT0034 at 31.236 kb on + strand, within BT0034 at 31.432 kb on + strand at 31.552 kb on - strand at 31.728 kb on + strand at 31.759 kb on - strand at 31.759 kb on - strand at 31.896 kb on - strand at 31.914 kb on + strand at 31.947 kb on - strand at 31.970 kb on - strand, within BT0035 at 31.977 kb on - strand, within BT0035 at 32.003 kb on + strand, within BT0035 at 32.092 kb on + strand, within BT0035 at 32.157 kb on + strand at 32.158 kb on - strand at 32.205 kb on + strand at 32.205 kb on + strand at 32.206 kb on - strand at 32.207 kb on + strand at 32.208 kb on - strand at 32.214 kb on + strand at 32.234 kb on - strand at 32.291 kb on - strand at 32.368 kb on + strand at 32.369 kb on - strand at 32.376 kb on - strand at 32.376 kb on - strand at 32.395 kb on - strand at 32.413 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction aerobic shaking 48 hr copy A remove 29,303 + BT0032 0.47 -1.4 29,304 - BT0032 0.48 -1.6 29,405 - -1.3 29,409 + -1.3 29,409 + -0.8 29,466 + +1.7 29,467 - -1.5 29,539 + +1.0 29,540 - -0.6 29,545 + +0.2 29,550 + +1.7 29,608 - +0.9 29,608 - -3.0 29,609 + +0.2 29,635 - +0.7 29,663 + -1.3 29,679 + -0.9 29,727 + BT0033 0.16 -0.8 29,728 - BT0033 0.16 -1.3 29,819 + BT0033 0.48 -1.5 29,886 + BT0033 0.71 -1.8 29,892 - BT0033 0.73 -1.9 29,910 - BT0033 0.79 -1.5 29,955 + +1.4 29,955 + -2.4 29,973 + -0.9 30,009 + +1.7 30,039 + +0.3 30,069 - +0.1 30,139 + -1.1 30,145 + -1.4 30,234 + +0.7 30,335 - +0.1 30,363 - -1.5 30,699 + BT0034 0.34 +0.1 30,700 - BT0034 0.35 -0.9 30,700 - BT0034 0.35 -2.2 30,749 + BT0034 0.39 -2.1 30,793 + BT0034 0.42 -0.9 30,804 + -0.3 30,872 - BT0034 0.49 -2.0 30,876 + BT0034 0.49 +0.1 31,081 - BT0034 0.66 -0.5 31,132 + BT0034 0.70 -0.9 31,133 - BT0034 0.70 -0.6 31,194 - BT0034 0.75 -0.4 31,201 + BT0034 0.76 +0.9 31,202 - BT0034 0.76 +1.5 31,236 + BT0034 0.79 +0.1 31,432 + -2.3 31,552 - -1.1 31,728 + -2.8 31,759 - +1.7 31,759 - -0.6 31,896 - -1.7 31,914 + -0.6 31,947 - -0.9 31,970 - BT0035 0.17 -1.9 31,977 - BT0035 0.21 -1.3 32,003 + BT0035 0.33 -1.0 32,092 + BT0035 0.77 -1.8 32,157 + -0.9 32,158 - -2.1 32,205 + -1.5 32,205 + -1.3 32,206 - +0.1 32,207 + -2.0 32,208 - -0.6 32,214 + +1.1 32,234 - -2.5 32,291 - -2.5 32,368 + -2.6 32,369 - -2.3 32,376 - +0.1 32,376 - -0.3 32,395 - -1.0 32,413 + -1.6
Or see this region's nucleotide sequence