Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_32

Experiment: aerobic shaking 48 hr copy A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntp5482_31 and p5482_32 are separated by 287 nucleotidesp5482_32 and p5482_33 are separated by 3 nucleotidesp5482_33 and p5482_34 are separated by 13 nucleotides p5482_31: p5482_31 - chromosome-partitioning ATPase (NCBI), at 25,937 to 26,695 _31 p5482_32: p5482_32 - hypothetical protein (NCBI), at 26,983 to 27,312 _32 p5482_33: p5482_33 - putative DNA-binding protein (NCBI), at 27,316 to 28,146 _33 p5482_34: p5482_34 - DNA resolvase (NCBI), at 28,160 to 28,798 _34 Position (kb) 26 27 28Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 26.211 kb on - strand, within p5482_31at 26.759 kb on + strandat 26.992 kb on + strandat 26.993 kb on - strandat 26.993 kb on - strandat 26.993 kb on - strandat 27.016 kb on - strand, within p5482_32at 27.017 kb on + strand, within p5482_32at 27.027 kb on + strand, within p5482_32at 27.048 kb on - strand, within p5482_32at 27.093 kb on + strand, within p5482_32at 27.097 kb on - strandat 27.097 kb on - strand, within p5482_32at 27.099 kb on + strand, within p5482_32at 27.099 kb on + strand, within p5482_32at 27.100 kb on - strand, within p5482_32at 27.100 kb on - strand, within p5482_32at 27.100 kb on - strand, within p5482_32at 27.123 kb on - strand, within p5482_32at 27.123 kb on - strand, within p5482_32at 27.130 kb on - strand, within p5482_32at 27.146 kb on - strand, within p5482_32at 27.147 kb on + strand, within p5482_32at 27.147 kb on + strand, within p5482_32at 27.192 kb on + strand, within p5482_32at 27.192 kb on + strand, within p5482_32at 27.192 kb on + strand, within p5482_32at 27.192 kb on + strand, within p5482_32at 27.193 kb on - strand, within p5482_32at 27.193 kb on - strand, within p5482_32at 27.194 kb on + strand, within p5482_32at 27.194 kb on + strand, within p5482_32at 27.194 kb on + strand, within p5482_32at 27.194 kb on + strand, within p5482_32at 27.195 kb on - strand, within p5482_32at 27.195 kb on - strand, within p5482_32at 27.198 kb on + strand, within p5482_32at 27.198 kb on + strand, within p5482_32at 27.198 kb on + strand, within p5482_32at 27.198 kb on + strand, within p5482_32at 27.199 kb on - strand, within p5482_32at 27.199 kb on - strand, within p5482_32at 27.199 kb on - strand, within p5482_32at 27.199 kb on - strand, within p5482_32at 27.199 kb on - strand, within p5482_32at 27.199 kb on - strand, within p5482_32at 27.216 kb on + strand, within p5482_32at 27.216 kb on + strand, within p5482_32at 27.246 kb on + strand, within p5482_32at 27.246 kb on + strand, within p5482_32at 27.246 kb on + strand, within p5482_32at 27.247 kb on - strand, within p5482_32at 27.247 kb on - strand, within p5482_32at 27.247 kb on - strand, within p5482_32at 27.247 kb on - strand, within p5482_32at 27.306 kb on + strandat 27.310 kb on + strandat 27.310 kb on + strandat 27.310 kb on + strandat 27.310 kb on + strandat 27.311 kb on - strandat 27.311 kb on - strandat 27.335 kb on + strandat 27.335 kb on + strandat 27.336 kb on - strandat 27.338 kb on + strandat 27.339 kb on - strandat 27.339 kb on - strandat 27.339 kb on - strandat 27.339 kb on - strandat 27.339 kb on - strandat 27.339 kb on - strandat 27.444 kb on + strand, within p5482_33at 27.444 kb on + strand, within p5482_33at 27.444 kb on + strand, within p5482_33at 27.448 kb on - strand, within p5482_33at 27.491 kb on + strand, within p5482_33at 27.492 kb on - strand, within p5482_33at 27.492 kb on - strand, within p5482_33at 27.492 kb on - strand, within p5482_33at 27.495 kb on + strand, within p5482_33at 27.495 kb on + strand, within p5482_33at 27.495 kb on + strand, within p5482_33at 27.495 kb on + strand, within p5482_33at 27.495 kb on + strand, within p5482_33at 27.495 kb on + strand, within p5482_33at 27.495 kb on + strand, within p5482_33at 27.495 kb on + strand, within p5482_33at 27.496 kb on - strand, within p5482_33at 27.496 kb on - strand, within p5482_33at 27.519 kb on + strand, within p5482_33at 27.519 kb on + strand, within p5482_33at 27.519 kb on + strand, within p5482_33at 27.520 kb on - strand, within p5482_33at 27.520 kb on - strand, within p5482_33at 27.520 kb on - strand, within p5482_33at 27.520 kb on - strand, within p5482_33at 27.520 kb on - strand, within p5482_33at 27.544 kb on + strand, within p5482_33at 27.544 kb on + strand, within p5482_33at 27.545 kb on - strand, within p5482_33at 27.545 kb on - strand, within p5482_33at 27.546 kb on + strand, within p5482_33at 27.546 kb on + strand, within p5482_33at 27.546 kb on + strand, within p5482_33at 27.547 kb on - strand, within p5482_33at 27.547 kb on - strand, within p5482_33at 27.547 kb on - strand, within p5482_33at 27.547 kb on - strand, within p5482_33at 27.547 kb on - strandat 27.547 kb on - strand, within p5482_33at 27.548 kb on - strand, within p5482_33at 27.549 kb on + strand, within p5482_33at 27.550 kb on - strand, within p5482_33at 27.552 kb on + strand, within p5482_33at 27.552 kb on + strand, within p5482_33at 27.553 kb on - strand, within p5482_33at 27.553 kb on - strand, within p5482_33at 27.553 kb on - strand, within p5482_33at 27.556 kb on + strand, within p5482_33at 27.556 kb on + strand, within p5482_33at 27.556 kb on + strand, within p5482_33at 27.557 kb on - strand, within p5482_33at 27.557 kb on - strand, within p5482_33at 27.557 kb on - strand, within p5482_33at 27.560 kb on - strand, within p5482_33at 27.560 kb on - strand, within p5482_33at 27.561 kb on + strand, within p5482_33at 27.562 kb on - strand, within p5482_33at 27.584 kb on + strand, within p5482_33at 27.597 kb on + strand, within p5482_33at 27.600 kb on + strand, within p5482_33at 27.600 kb on + strand, within p5482_33at 27.600 kb on + strand, within p5482_33at 27.641 kb on + strand, within p5482_33at 27.641 kb on + strand, within p5482_33at 27.641 kb on + strand, within p5482_33at 27.641 kb on + strand, within p5482_33at 27.641 kb on + strand, within p5482_33at 27.642 kb on - strand, within p5482_33at 27.642 kb on - strand, within p5482_33at 27.642 kb on - strand, within p5482_33at 27.642 kb on - strand, within p5482_33at 27.644 kb on + strand, within p5482_33at 27.652 kb on + strand, within p5482_33at 27.652 kb on + strand, within p5482_33at 27.653 kb on - strand, within p5482_33at 27.659 kb on + strand, within p5482_33at 27.667 kb on + strand, within p5482_33at 27.668 kb on - strand, within p5482_33at 27.678 kb on + strand, within p5482_33at 27.679 kb on - strand, within p5482_33at 27.717 kb on + strand, within p5482_33at 27.729 kb on - strand, within p5482_33at 27.744 kb on + strand, within p5482_33at 27.744 kb on + strand, within p5482_33at 27.745 kb on - strand, within p5482_33at 27.745 kb on - strand, within p5482_33at 27.800 kb on - strand, within p5482_33at 27.800 kb on - strand, within p5482_33at 27.800 kb on - strand, within p5482_33at 27.822 kb on - strand, within p5482_33at 27.850 kb on - strand, within p5482_33at 27.859 kb on + strand, within p5482_33at 27.859 kb on + strand, within p5482_33at 27.860 kb on - strand, within p5482_33at 27.860 kb on - strand, within p5482_33at 27.860 kb on - strand, within p5482_33at 27.860 kb on - strand, within p5482_33at 27.860 kb on - strand, within p5482_33at 27.860 kb on - strand, within p5482_33at 27.860 kb on - strand, within p5482_33at 27.922 kb on + strand, within p5482_33at 27.922 kb on + strand, within p5482_33at 27.922 kb on + strand, within p5482_33at 27.934 kb on - strand, within p5482_33at 27.934 kb on - strand, within p5482_33at 27.934 kb on - strand, within p5482_33at 27.969 kb on + strand, within p5482_33at 27.969 kb on + strand, within p5482_33at 27.969 kb on + strand, within p5482_33at 27.969 kb on + strand, within p5482_33at 27.969 kb on + strand, within p5482_33at 27.970 kb on - strand, within p5482_33at 27.970 kb on - strand, within p5482_33at 27.970 kb on - strand, within p5482_33at 27.970 kb on - strand, within p5482_33at 27.987 kb on + strand, within p5482_33at 27.988 kb on - strand, within p5482_33at 28.051 kb on + strand, within p5482_33at 28.051 kb on + strand, within p5482_33at 28.051 kb on + strand, within p5482_33at 28.052 kb on - strand, within p5482_33at 28.052 kb on - strand, within p5482_33at 28.052 kb on - strand, within p5482_33at 28.052 kb on - strand, within p5482_33at 28.071 kb on - strandat 28.131 kb on - strandat 28.131 kb on - strandat 28.142 kb on + strandat 28.143 kb on - strandat 28.143 kb on - strandat 28.143 kb on - strandat 28.144 kb on + strandat 28.144 kb on + strandat 28.144 kb on + strandat 28.144 kb on + strandat 28.144 kb on + strandat 28.145 kb on - strandat 28.145 kb on - strandat 28.147 kb on + strandat 28.147 kb on + strandat 28.148 kb on - strandat 28.148 kb on - strandat 28.148 kb on - strandat 28.148 kb on - strandat 28.159 kb on + strandat 28.175 kb on + strandat 28.175 kb on + strandat 28.175 kb on + strandat 28.175 kb on + strandat 28.176 kb on - strandat 28.185 kb on + strandat 28.186 kb on - strandat 28.186 kb on - strandat 28.186 kb on - strandat 28.186 kb on - strandat 28.260 kb on - strand, within p5482_34at 28.291 kb on - strand, within p5482_34

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Per-strain Table

Position Strand Gene LocusTag Fraction aerobic shaking 48 hr copy A
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26,211 - p5482_31 0.36 -1.2
26,759 + -2.0
26,992 + -0.0
26,993 - -1.5
26,993 - -0.5
26,993 - -1.7
27,016 - p5482_32 0.10 -0.5
27,017 + p5482_32 0.10 -1.9
27,027 + p5482_32 0.13 -2.1
27,048 - p5482_32 0.20 -3.3
27,093 + p5482_32 0.33 -1.7
27,097 - +1.1
27,097 - p5482_32 0.35 -1.5
27,099 + p5482_32 0.35 +1.1
27,099 + p5482_32 0.35 -1.3
27,100 - p5482_32 0.35 -2.7
27,100 - p5482_32 0.35 -1.8
27,100 - p5482_32 0.35 -1.8
27,123 - p5482_32 0.42 -4.2
27,123 - p5482_32 0.42 -1.4
27,130 - p5482_32 0.45 -1.6
27,146 - p5482_32 0.49 -1.8
27,147 + p5482_32 0.50 -2.3
27,147 + p5482_32 0.50 -3.8
27,192 + p5482_32 0.63 +1.0
27,192 + p5482_32 0.63 -1.3
27,192 + p5482_32 0.63 +0.9
27,192 + p5482_32 0.63 -0.8
27,193 - p5482_32 0.64 -1.0
27,193 - p5482_32 0.64 -0.6
27,194 + p5482_32 0.64 -2.4
27,194 + p5482_32 0.64 -2.3
27,194 + p5482_32 0.64 -2.1
27,194 + p5482_32 0.64 -2.7
27,195 - p5482_32 0.64 -1.5
27,195 - p5482_32 0.64 -0.7
27,198 + p5482_32 0.65 -1.9
27,198 + p5482_32 0.65 -1.5
27,198 + p5482_32 0.65 -0.5
27,198 + p5482_32 0.65 -1.3
27,199 - p5482_32 0.65 -1.7
27,199 - p5482_32 0.65 -3.9
27,199 - p5482_32 0.65 -0.4
27,199 - p5482_32 0.65 +0.8
27,199 - p5482_32 0.65 -3.3
27,199 - p5482_32 0.65 -1.6
27,216 + p5482_32 0.71 -2.4
27,216 + p5482_32 0.71 -0.9
27,246 + p5482_32 0.80 -1.5
27,246 + p5482_32 0.80 -0.4
27,246 + p5482_32 0.80 -1.3
27,247 - p5482_32 0.80 -0.3
27,247 - p5482_32 0.80 -0.7
27,247 - p5482_32 0.80 -0.5
27,247 - p5482_32 0.80 -1.7
27,306 + -1.4
27,310 + -2.1
27,310 + -0.3
27,310 + -1.0
27,310 + -0.2
27,311 - -1.6
27,311 - +1.1
27,335 + -2.9
27,335 + +2.1
27,336 - +0.2
27,338 + -0.7
27,339 - -0.5
27,339 - -1.5
27,339 - -0.8
27,339 - +0.5
27,339 - -0.7
27,339 - +0.1
27,444 + p5482_33 0.15 -1.5
27,444 + p5482_33 0.15 -1.3
27,444 + p5482_33 0.15 -3.2
27,448 - p5482_33 0.16 -0.9
27,491 + p5482_33 0.21 +0.1
27,492 - p5482_33 0.21 +2.0
27,492 - p5482_33 0.21 -3.3
27,492 - p5482_33 0.21 +0.7
27,495 + p5482_33 0.22 -0.3
27,495 + p5482_33 0.22 -1.9
27,495 + p5482_33 0.22 -2.6
27,495 + p5482_33 0.22 +0.0
27,495 + p5482_33 0.22 -2.1
27,495 + p5482_33 0.22 -1.1
27,495 + p5482_33 0.22 -2.4
27,495 + p5482_33 0.22 -1.5
27,496 - p5482_33 0.22 -2.3
27,496 - p5482_33 0.22 -1.9
27,519 + p5482_33 0.24 +1.4
27,519 + p5482_33 0.24 -0.4
27,519 + p5482_33 0.24 -1.8
27,520 - p5482_33 0.25 -0.5
27,520 - p5482_33 0.25 -1.5
27,520 - p5482_33 0.25 -0.0
27,520 - p5482_33 0.25 -2.3
27,520 - p5482_33 0.25 -1.7
27,544 + p5482_33 0.27 +0.1
27,544 + p5482_33 0.27 -1.1
27,545 - p5482_33 0.28 +0.5
27,545 - p5482_33 0.28 -0.8
27,546 + p5482_33 0.28 -1.4
27,546 + p5482_33 0.28 -0.5
27,546 + p5482_33 0.28 -0.2
27,547 - p5482_33 0.28 -1.9
27,547 - p5482_33 0.28 -1.4
27,547 - p5482_33 0.28 -1.5
27,547 - p5482_33 0.28 -0.7
27,547 - +2.1
27,547 - p5482_33 0.28 +0.7
27,548 - p5482_33 0.28 -1.7
27,549 + p5482_33 0.28 -0.7
27,550 - p5482_33 0.28 -0.7
27,552 + p5482_33 0.28 -0.2
27,552 + p5482_33 0.28 +1.1
27,553 - p5482_33 0.29 -1.1
27,553 - p5482_33 0.29 -2.0
27,553 - p5482_33 0.29 -0.5
27,556 + p5482_33 0.29 -0.0
27,556 + p5482_33 0.29 -1.7
27,556 + p5482_33 0.29 -2.2
27,557 - p5482_33 0.29 -1.3
27,557 - p5482_33 0.29 -1.3
27,557 - p5482_33 0.29 -1.0
27,560 - p5482_33 0.29 -1.1
27,560 - p5482_33 0.29 +0.9
27,561 + p5482_33 0.29 -3.0
27,562 - p5482_33 0.30 -4.1
27,584 + p5482_33 0.32 -2.4
27,597 + p5482_33 0.34 -0.7
27,600 + p5482_33 0.34 -1.7
27,600 + p5482_33 0.34 -0.9
27,600 + p5482_33 0.34 -0.1
27,641 + p5482_33 0.39 +0.7
27,641 + p5482_33 0.39 +0.5
27,641 + p5482_33 0.39 -1.6
27,641 + p5482_33 0.39 -0.3
27,641 + p5482_33 0.39 -2.4
27,642 - p5482_33 0.39 -0.2
27,642 - p5482_33 0.39 -3.0
27,642 - p5482_33 0.39 -3.1
27,642 - p5482_33 0.39 -2.4
27,644 + p5482_33 0.39 -3.5
27,652 + p5482_33 0.40 -2.0
27,652 + p5482_33 0.40 -0.9
27,653 - p5482_33 0.41 -0.3
27,659 + p5482_33 0.41 -2.4
27,667 + p5482_33 0.42 +0.8
27,668 - p5482_33 0.42 +0.5
27,678 + p5482_33 0.44 -0.5
27,679 - p5482_33 0.44 -0.2
27,717 + p5482_33 0.48 +0.6
27,729 - p5482_33 0.50 -2.5
27,744 + p5482_33 0.52 -0.0
27,744 + p5482_33 0.52 -0.7
27,745 - p5482_33 0.52 -0.6
27,745 - p5482_33 0.52 -1.3
27,800 - p5482_33 0.58 -3.5
27,800 - p5482_33 0.58 -0.4
27,800 - p5482_33 0.58 -0.5
27,822 - p5482_33 0.61 -1.6
27,850 - p5482_33 0.64 -0.7
27,859 + p5482_33 0.65 -0.2
27,859 + p5482_33 0.65 +1.1
27,860 - p5482_33 0.65 +2.8
27,860 - p5482_33 0.65 -2.4
27,860 - p5482_33 0.65 -2.3
27,860 - p5482_33 0.65 -0.3
27,860 - p5482_33 0.65 +0.7
27,860 - p5482_33 0.65 +2.0
27,860 - p5482_33 0.65 -2.4
27,922 + p5482_33 0.73 -1.5
27,922 + p5482_33 0.73 -2.0
27,922 + p5482_33 0.73 -2.0
27,934 - p5482_33 0.74 +0.0
27,934 - p5482_33 0.74 -3.2
27,934 - p5482_33 0.74 -3.3
27,969 + p5482_33 0.79 -2.2
27,969 + p5482_33 0.79 -2.6
27,969 + p5482_33 0.79 -3.1
27,969 + p5482_33 0.79 -0.2
27,969 + p5482_33 0.79 -0.3
27,970 - p5482_33 0.79 -2.4
27,970 - p5482_33 0.79 -2.6
27,970 - p5482_33 0.79 -1.0
27,970 - p5482_33 0.79 -1.1
27,987 + p5482_33 0.81 -0.3
27,988 - p5482_33 0.81 +0.1
28,051 + p5482_33 0.88 -2.3
28,051 + p5482_33 0.88 -0.1
28,051 + p5482_33 0.88 +1.1
28,052 - p5482_33 0.89 -1.8
28,052 - p5482_33 0.89 -1.5
28,052 - p5482_33 0.89 +0.5
28,052 - p5482_33 0.89 -0.7
28,071 - -1.5
28,131 - -2.1
28,131 - -0.7
28,142 + -2.5
28,143 - +2.1
28,143 - -1.5
28,143 - +0.4
28,144 + -0.8
28,144 + -0.2
28,144 + +1.1
28,144 + +0.5
28,144 + -2.0
28,145 - -1.1
28,145 - -1.6
28,147 + -0.5
28,147 + -1.6
28,148 - -0.9
28,148 - -2.0
28,148 - -1.1
28,148 - -2.0
28,159 + +2.1
28,175 + -1.2
28,175 + -2.3
28,175 + -2.1
28,175 + -0.2
28,176 - -0.3
28,185 + -0.2
28,186 - -2.3
28,186 - +0.1
28,186 - -1.3
28,186 - -0.2
28,260 - p5482_34 0.16 +1.0
28,291 - p5482_34 0.21 -1.9

Or see this region's nucleotide sequence