Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5068

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
6,011,891	-				-0.4
6,011,894	+				+0.8
6,011,894	+				+0.7
6,011,894	+				+0.6
6,011,894	+				-1.5
6,011,894	+				-1.9
6,011,895	-				-0.3
6,011,917	-				-1.8
6,011,921	+				-0.7
6,011,921	+				+0.9
6,011,921	+				-0.8
6,011,921	+				+0.4
6,011,921	+				-2.2
6,011,921	+				+0.7
6,011,921	+				-0.8
6,011,921	+				+0.4
6,011,922	-				-1.6
6,011,922	-				+0.8
6,011,922	-				-3.2
6,012,115	+		Psyr_5067	0.39	-0.1
6,012,115	+		Psyr_5067	0.39	-1.1
6,012,116	-		Psyr_5067	0.39	+0.7
6,012,116	-		Psyr_5067	0.39	-1.1
6,012,116	-		Psyr_5067	0.39	-1.6
6,012,116	-		Psyr_5067	0.39	-1.9
6,012,116	-		Psyr_5067	0.39	-1.3
6,012,163	+		Psyr_5067	0.51	-2.1
6,012,163	+		Psyr_5067	0.51	-0.5
6,012,245	-		Psyr_5067	0.71	+0.6
6,012,247	+		Psyr_5067	0.71	-1.9
6,012,247	+		Psyr_5067	0.71	-3.2
6,012,248	-		Psyr_5067	0.72	-0.3
6,012,272	+		Psyr_5067	0.77	-0.5
6,012,272	+		Psyr_5067	0.77	+1.2
6,012,272	+		Psyr_5067	0.77	-2.1
6,012,272	+		Psyr_5067	0.77	-0.3
6,012,272	+		Psyr_5067	0.77	+1.2
6,012,272	+		Psyr_5067	0.77	+2.6
6,012,272	+		Psyr_5067	0.77	-0.8
6,012,273	-		Psyr_5067	0.78	-2.7
6,012,273	-		Psyr_5067	0.78	-0.3
6,012,273	-		Psyr_5067	0.78	+1.0
6,012,273	-		Psyr_5067	0.78	-1.6
6,012,273	-		Psyr_5067	0.78	-0.1
6,012,273	-		Psyr_5067	0.78	+0.8
6,012,273	-		Psyr_5067	0.78	-2.5
6,012,461	+				+2.0
6,012,461	+				+3.4
6,012,461	+				+0.4
6,012,461	+				+0.6
6,012,461	+				-1.1
6,012,462	-				+3.8
6,012,462	-				-0.8
6,012,585	+		Psyr_5068	0.11	+0.2
6,012,585	+		Psyr_5068	0.11	-2.1
6,012,585	+		Psyr_5068	0.11	-1.4
6,012,626	+		Psyr_5068	0.13	-1.1
6,012,627	-		Psyr_5068	0.13	-2.7
6,012,805	+		Psyr_5068	0.23	+0.2
6,012,805	+		Psyr_5068	0.23	-0.2
6,012,805	+		Psyr_5068	0.23	+1.7
6,012,805	+		Psyr_5068	0.23	-0.2
6,012,805	+		Psyr_5068	0.23	+0.2
6,012,805	+		Psyr_5068	0.23	+0.5
6,012,805	+		Psyr_5068	0.23	+0.4
6,012,806	-		Psyr_5068	0.23	+0.0
6,012,806	-		Psyr_5068	0.23	+0.0
6,012,829	+		Psyr_5068	0.24	-1.8
6,012,830	-		Psyr_5068	0.24	-0.1
6,012,959	-		Psyr_5068	0.32	-0.2
6,013,187	+		Psyr_5068	0.45	+1.0
6,013,188	-		Psyr_5068	0.45	+0.3
6,013,282	+		Psyr_5068	0.50	-1.5
6,013,282	+		Psyr_5068	0.50	-0.7
6,013,441	+		Psyr_5068	0.59	-0.2
6,013,441	+		Psyr_5068	0.59	+0.8
6,013,441	+		Psyr_5068	0.59	+0.5
6,013,441	+		Psyr_5068	0.59	-0.3
6,013,441	+		Psyr_5068	0.59	-0.3
6,013,442	-		Psyr_5068	0.59	+0.2
6,013,442	-		Psyr_5068	0.59	-2.2
6,013,531	+		Psyr_5068	0.64	+0.3
6,013,531	+		Psyr_5068	0.64	+0.8
6,013,531	+		Psyr_5068	0.64	-1.8
6,013,531	+		Psyr_5068	0.64	-0.4
6,013,531	+		Psyr_5068	0.64	-1.6
6,013,531	+		Psyr_5068	0.64	-0.1
6,013,531	+		Psyr_5068	0.64	-2.1
6,013,531	+		Psyr_5068	0.64	-2.9
6,013,531	+		Psyr_5068	0.64	+0.1
6,013,532	-		Psyr_5068	0.64	-0.6
6,013,532	-		Psyr_5068	0.64	+0.4
6,013,532	-		Psyr_5068	0.64	+0.0
6,013,532	-		Psyr_5068	0.64	-0.0
6,013,532	-		Psyr_5068	0.64	-0.6
6,013,532	-		Psyr_5068	0.64	-0.7
6,013,532	-		Psyr_5068	0.64	-2.1
6,014,057	+				+2.1
6,014,059	+				-0.6
6,014,059	+				-1.9
6,014,059	+				-0.5
6,014,059	+				-2.9
6,014,059	+				-0.6
6,014,059	+				-1.3
6,014,059	+				-1.2
6,014,060	-				-1.2
6,014,060	-				+0.1
6,014,060	-				+0.5
6,014,060	-				-0.7
6,014,060	-				+1.6
6,014,060	-				+0.2
6,014,060	-				+1.2
6,014,067	+				+1.2
6,014,068	-				+0.1
6,014,215	+				-0.6
6,014,316	+				+0.8
6,014,316	+				-1.9
6,014,330	+				+0.1
6,014,330	+				-1.3
6,014,330	+				-0.7
6,014,330	+				+1.2
6,014,330	+				-0.8
6,014,330	+				-0.3
6,014,330	+				+0.8
6,014,330	+				-0.2
6,014,330	+				-1.1
6,014,331	-				+0.2
6,014,331	-				-0.6
6,014,331	-				+0.9
6,014,331	-				+1.0
6,014,331	-				-0.3
6,014,331	-				+0.4
6,014,331	-				-1.1
6,014,331	-				+1.2
6,014,331	-				+0.5
6,014,332	+				-1.6
6,014,344	+				+1.1
6,014,344	+				-0.4
6,014,344	+				-0.7
6,014,344	+				+0.7
6,014,344	+				+0.1
6,014,344	+				+0.8
6,014,344	+				-0.0
6,014,344	+				-0.6
6,014,344	+				-0.1
6,014,344	+				-0.4
6,014,344	+				+0.3
6,014,345	-				-1.8
6,014,345	-				-1.6
6,014,345	-				+0.2
6,014,345	-				-0.0
6,014,348	+				-0.3
6,014,348	+				+0.4
6,014,349	-				+0.5
6,014,349	-				+0.6
6,014,386	+				+0.6
6,014,417	-				+2.0
6,014,448	+				-0.8
6,014,448	+				+0.3
6,014,449	-				-1.4
6,014,488	+				-0.3
6,014,488	+				-0.1
6,014,488	+				-1.3
6,014,488	+				+0.6
6,014,488	+				+0.3
6,014,488	+				-0.9
6,014,488	+				+1.2
6,014,489	-				-0.1
6,014,489	-				-2.2
6,014,489	-				+0.2
6,014,489	-				-2.2
6,014,489	-				-0.5
6,014,489	-				+1.5
6,014,527	+		Psyr_5069	0.15	-1.2
6,014,527	+		Psyr_5069	0.15	+0.2
6,014,527	+		Psyr_5069	0.15	+0.6
6,014,527	+		Psyr_5069	0.15	+0.8
6,014,527	+		Psyr_5069	0.15	-0.5
6,014,528	-		Psyr_5069	0.15	-2.8
6,014,528	-		Psyr_5069	0.15	-0.9
6,014,550	+		Psyr_5069	0.20	+0.4
6,014,550	+		Psyr_5069	0.20	-3.0
6,014,550	+		Psyr_5069	0.20	+0.1
6,014,550	+		Psyr_5069	0.20	-3.2
6,014,568	+		Psyr_5069	0.23	-0.6
6,014,598	+		Psyr_5069	0.30	+0.5
6,014,685	+		Psyr_5069	0.48	+0.4
6,014,685	+		Psyr_5069	0.48	-0.2
6,014,685	+		Psyr_5069	0.48	+0.9
6,014,685	+		Psyr_5069	0.48	-1.6
6,014,685	+		Psyr_5069	0.48	-0.8
6,014,685	+		Psyr_5069	0.48	+2.0
6,014,686	-		Psyr_5069	0.48	+0.3
6,014,686	-		Psyr_5069	0.48	-2.2
6,014,686	-		Psyr_5069	0.48	-0.0
6,014,937	+				-1.3
6,014,937	+				+0.0
6,014,937	+				-1.4
6,014,937	+				-1.9
6,014,938	-				+0.3
6,014,938	-				-0.2
6,014,938	-				+0.2
6,014,938	-				+0.6
6,014,990	-				+0.6
6,015,061	+				-1.4
6,015,061	+				+0.1
6,015,061	+				-1.2
6,015,061	+				-0.2
6,015,062	-				+1.1